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SPART (spartin)

Identity

Other aliasSPG20
TAHCCP1
HGNC (Hugo) SPART
LocusID (NCBI) 23111
Atlas_Id 56978
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36301638 and ends at 36370180 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPART   18514
Cards
Entrez_Gene (NCBI)SPART  23111  spartin
AliasesSPG20; TAHCCP1
GeneCards (Weizmann)SPART
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:36301638-36370180 [Contig_View]  SPART [Vega]
TCGA cBioPortalSPART
AceView (NCBI)SPART
Genatlas (Paris)SPART
WikiGenes23111
SOURCE (Princeton)SPART
Genetics Home Reference (NIH)SPART
Genomic and cartography
GoldenPath hg38 (UCSC)SPART  -     chr13:36301638-36370180 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPART  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblSPART - 13q13.3 [CytoView hg19]  SPART - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBISPART [Mapview hg19]  SPART [Mapview hg38]
OMIM275900   607111   
Gene and transcription
Genbank (Entrez)AA137195 AB011182 AK001949 AK002207 AK057764
RefSeq transcript (Entrez)NM_001142294 NM_001142295 NM_001142296 NM_015087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPART
Cluster EST : UnigeneHs.440414 [ NCBI ]
CGAP (NCI)Hs.440414
Gene ExpressionSPART [ NCBI-GEO ]   SPART [ EBI - ARRAY_EXPRESS ]   SPART [ SEEK ]   SPART [ MEM ]
Gene Expression Viewer (FireBrowse)SPART [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23111
GTEX Portal (Tissue expression)SPART
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0X7
Splice isoforms : SwissVarQ8N0X7
PhosPhoSitePlusQ8N0X7
Domains : Interpro (EBI)MIT    Senescence/spartin   
Domain families : Pfam (Sanger)Senescence (PF06911)   
Domain families : Pfam (NCBI)pfam06911   
Domain families : Smart (EMBL)MIT (SM00745)  
Conserved Domain (NCBI)SPART
DMDM Disease mutations23111
Blocks (Seattle)SPART
PDB (SRS)2DL1    4U7I   
PDB (PDBSum)2DL1    4U7I   
PDB (IMB)2DL1    4U7I   
PDB (RSDB)2DL1    4U7I   
Structural Biology KnowledgeBase2DL1    4U7I   
SCOP (Structural Classification of Proteins)2DL1    4U7I   
CATH (Classification of proteins structures)2DL1    4U7I   
SuperfamilyQ8N0X7
Peptide AtlasQ8N0X7
IPIIPI00430622   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0X7
IntAct (EBI)Q8N0X7
BioGRIDSPART
STRING (EMBL)SPART
ZODIACSPART
Ontologies - Pathways
QuickGOQ8N0X7
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  mitochondrial outer membrane  lipid droplet  cytosol  plasma membrane  abscission  midbody  negative regulation of BMP signaling pathway  ubiquitin protein ligase binding  lipid particle organization  synapse  negative regulation of collateral sprouting in absence of injury  neuromuscular process  cell division  regulation of mitochondrial membrane potential  adipose tissue development  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  mitochondrial outer membrane  lipid droplet  cytosol  plasma membrane  abscission  midbody  negative regulation of BMP signaling pathway  ubiquitin protein ligase binding  lipid particle organization  synapse  negative regulation of collateral sprouting in absence of injury  neuromuscular process  cell division  regulation of mitochondrial membrane potential  adipose tissue development  
NDEx NetworkSPART
Atlas of Cancer Signalling NetworkSPART
Wikipedia pathwaysSPART
Orthology - Evolution
OrthoDB23111
Phylogenetic Trees/Animal Genes : TreeFamSPART
HOVERGENQ8N0X7
HOGENOMQ8N0X7
Homologs : HomoloGeneSPART
Homology/Alignments : Family Browser (UCSC)SPART
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPART [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPART
dbVarSPART
ClinVarSPART
1000_GenomesSPART 
Exome Variant ServerSPART
ExAC (Exome Aggregation Consortium)SPART (select the gene name)
Genetic variants : HAPMAP23111
Genomic Variants (DGV)SPART [DGVbeta]
DECIPHERSPART [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPART 
Mutations
ICGC Data PortalSPART 
TCGA Data PortalSPART 
Broad Tumor PortalSPART
OASIS PortalSPART [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPART
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPART
DgiDB (Drug Gene Interaction Database)SPART
DoCM (Curated mutations)SPART (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPART (select a term)
intoGenSPART
Cancer3DSPART(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM275900    607111   
Orphanet
MedgenSPART
Genetic Testing Registry SPART
NextProtQ8N0X7 [Medical]
TSGene23111
GENETestsSPART
Target ValidationSPART
Huge Navigator SPART [HugePedia]
snp3D : Map Gene to Disease23111
BioCentury BCIQSPART
ClinGenSPART
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23111
Chemical/Pharm GKB GenePA134871645
Clinical trialSPART
Miscellaneous
canSAR (ICR)SPART (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPART
EVEXSPART
GoPubMedSPART
iHOPSPART
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:38 CEST 2017

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