Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA1 (spermatogenesis associated 1)

Identity

Alias_symbol (synonym)SP-2
Other aliasSPAP1
HGNC (Hugo) SPATA1
LocusID (NCBI) 100505741
Atlas_Id 74115
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 84506301 and ends at 84556495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPATA1 (1p22.3) / VPS26A (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA1   14682
Cards
Entrez_Gene (NCBI)SPATA1  100505741  spermatogenesis associated 1
AliasesSP-2; SPAP1
GeneCards (Weizmann)SPATA1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:84506301-84556495 [Contig_View]  SPATA1 [Vega]
TCGA cBioPortalSPATA1
AceView (NCBI)SPATA1
Genatlas (Paris)SPATA1
WikiGenes100505741
SOURCE (Princeton)SPATA1
Genetics Home Reference (NIH)SPATA1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA1  -     chr1:84506301-84556495 +  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA1  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA1 - 1p22.3 [CytoView hg19]  SPATA1 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBISPATA1 [Mapview hg19]  SPATA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF306347 BC064144 BC119641 BC119642 BC127634
RefSeq transcript (Entrez)NM_001081472 NM_001310156 NM_022354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA1
Cluster EST : UnigeneHs.584956 [ NCBI ]
CGAP (NCI)Hs.584956
Gene ExpressionSPATA1 [ NCBI-GEO ]   SPATA1 [ EBI - ARRAY_EXPRESS ]   SPATA1 [ SEEK ]   SPATA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505741
GTEX Portal (Tissue expression)SPATA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VX52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VX52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VX52
Splice isoforms : SwissVarQ5VX52
PhosPhoSitePlusQ5VX52
Domains : Interpro (EBI)SPATA1_C   
Domain families : Pfam (Sanger)SPATA1_C (PF15743)   
Domain families : Pfam (NCBI)pfam15743   
Conserved Domain (NCBI)SPATA1
DMDM Disease mutations100505741
Blocks (Seattle)SPATA1
SuperfamilyQ5VX52
Peptide AtlasQ5VX52
IPIIPI00514111   IPI00970868   IPI00983924   
Protein Interaction databases
DIP (DOE-UCLA)Q5VX52
IntAct (EBI)Q5VX52
BioGRIDSPATA1
STRING (EMBL)SPATA1
ZODIACSPATA1
Ontologies - Pathways
QuickGOQ5VX52
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATA1
Atlas of Cancer Signalling NetworkSPATA1
Wikipedia pathwaysSPATA1
Orthology - Evolution
OrthoDB100505741
Phylogenetic Trees/Animal Genes : TreeFamSPATA1
HOVERGENQ5VX52
HOGENOMQ5VX52
Homologs : HomoloGeneSPATA1
Homology/Alignments : Family Browser (UCSC)SPATA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA1
dbVarSPATA1
ClinVarSPATA1
1000_GenomesSPATA1 
Exome Variant ServerSPATA1
ExAC (Exome Aggregation Consortium)SPATA1 (select the gene name)
Genetic variants : HAPMAP100505741
Genomic Variants (DGV)SPATA1 [DGVbeta]
DECIPHERSPATA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA1 
Mutations
ICGC Data PortalSPATA1 
TCGA Data PortalSPATA1 
Broad Tumor PortalSPATA1
OASIS PortalSPATA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA1
DgiDB (Drug Gene Interaction Database)SPATA1
DoCM (Curated mutations)SPATA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA1 (select a term)
intoGenSPATA1
Cancer3DSPATA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA1
Genetic Testing Registry SPATA1
NextProtQ5VX52 [Medical]
TSGene100505741
GENETestsSPATA1
Target ValidationSPATA1
Huge Navigator SPATA1 [HugePedia]
snp3D : Map Gene to Disease100505741
BioCentury BCIQSPATA1
ClinGenSPATA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505741
Chemical/Pharm GKB GenePA37910
Clinical trialSPATA1
Miscellaneous
canSAR (ICR)SPATA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA1
EVEXSPATA1
GoPubMedSPATA1
iHOPSPATA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.