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SPATA13 (spermatogenesis associated 13)

Identity

Alias (NCBI)ARHGEF29
ASEF2
HGNC (Hugo) SPATA13
HGNC Alias symbFLJ31208
ARHGEF29
ASEF2
HGNC Alias nameAPC stimulated guanine nucleotide exchange factor 2
LocusID (NCBI) 221178
Atlas_Id 43501
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24160720 and ends at 24307068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5G3 (2q31.1) / SPATA13 (13q12.12)RIT1 (1q22) / SPATA13 (13q12.12)RPL32P3 (3q21.3) / SPATA13 (13q12.12)
SPATA13 (13q12.12) / PFKFB4 (3p21.31)SPATA13 (13q12.12) / PRRC2C (1q24.3)SPATA13 13q12.12 / PRRC2C 1q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SPATA13   23222
Cards
Entrez_Gene (NCBI)SPATA13    spermatogenesis associated 13
AliasesARHGEF29; ASEF2
GeneCards (Weizmann)SPATA13
Ensembl hg19 (Hinxton)ENSG00000182957 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182957 [Gene_View]  ENSG00000182957 [Sequence]  chr13:24160720-24307068 [Contig_View]  SPATA13 [Vega]
ICGC DataPortalENSG00000182957
TCGA cBioPortalSPATA13
AceView (NCBI)SPATA13
Genatlas (Paris)SPATA13
SOURCE (Princeton)SPATA13
Genetics Home Reference (NIH)SPATA13
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA13  -     chr13:24160720-24307068 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA13  -     13q12.12   [Description]    (hg19-Feb_2009)
GoldenPathSPATA13 - 13q12.12 [CytoView hg19]  SPATA13 - 13q12.12 [CytoView hg38]
ImmunoBaseENSG00000182957
Genome Data Viewer NCBISPATA13 [Mapview hg19]  
OMIM613324   
Gene and transcription
Genbank (Entrez)AK025586 AK055770 AK074117 AK092754 AK092759
RefSeq transcript (Entrez)NM_001166271 NM_001286792 NM_001286793 NM_001286794 NM_001286795 NM_153023
Consensus coding sequences : CCDS (NCBI)SPATA13
Gene ExpressionSPATA13 [ NCBI-GEO ]   SPATA13 [ EBI - ARRAY_EXPRESS ]   SPATA13 [ SEEK ]   SPATA13 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA13 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221178
GTEX Portal (Tissue expression)SPATA13
Human Protein AtlasENSG00000182957-SPATA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA13
Human Protein Atlas [tissue]ENSG00000182957-SPATA13 [tissue]
HPRD15427
Protein Interaction databases
BioGRIDSPATA13
STRING (EMBL)SPATA13
ZODIACSPATA13
Ontologies - Pathways
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:47 CEST 2021

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