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SPATA13 (spermatogenesis associated 13)

Identity

Alias_symbol (synonym)FLJ31208
ARHGEF29
Other aliasASEF2
HGNC (Hugo) SPATA13
LocusID (NCBI) 221178
Atlas_Id 43501
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24734855 and ends at 24881212 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP5G3 (2q31.1) / SPATA13 (13q12.12)RIT1 (1q22) / SPATA13 (13q12.12)RPL32P3 (3q21.3) / SPATA13 (13q12.12)
SPATA13 (13q12.12) / PFKFB4 (3p21.31)SPATA13 (13q12.12) / PRRC2C (1q24.3)SPATA13 13q12.12 / PRRC2C 1q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA13   23222
Cards
Entrez_Gene (NCBI)SPATA13  221178  spermatogenesis associated 13
AliasesARHGEF29; ASEF2
GeneCards (Weizmann)SPATA13
Ensembl hg19 (Hinxton)ENSG00000182957 [Gene_View]  chr13:24734855-24881212 [Contig_View]  SPATA13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182957 [Gene_View]  chr13:24734855-24881212 [Contig_View]  SPATA13 [Vega]
ICGC DataPortalENSG00000182957
TCGA cBioPortalSPATA13
AceView (NCBI)SPATA13
Genatlas (Paris)SPATA13
WikiGenes221178
SOURCE (Princeton)SPATA13
Genetics Home Reference (NIH)SPATA13
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA13  -     chr13:24734855-24881212 +  13q12.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA13  -     13q12.12   [Description]    (hg38-Dec_2013)
EnsemblSPATA13 - 13q12.12 [CytoView hg19]  SPATA13 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBISPATA13 [Mapview hg19]  SPATA13 [Mapview hg38]
OMIM613324   
Gene and transcription
Genbank (Entrez)AK025586 AK055770 AK074117 AK092754 AK092759
RefSeq transcript (Entrez)NM_001166271 NM_001286792 NM_001286793 NM_001286794 NM_001286795 NM_153023
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)SPATA13
Cluster EST : UnigeneHs.595391 [ NCBI ]
CGAP (NCI)Hs.595391
Alternative Splicing GalleryENSG00000182957
Gene ExpressionSPATA13 [ NCBI-GEO ]   SPATA13 [ EBI - ARRAY_EXPRESS ]   SPATA13 [ SEEK ]   SPATA13 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221178
GTEX Portal (Tissue expression)SPATA13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N96
Splice isoforms : SwissVarQ96N96
PhosPhoSitePlusQ96N96
Domaine pattern : Prosite (Expaxy)DH_2 (PS50010)    PH_DOMAIN (PS50003)    SH3 (PS50002)   
Domains : Interpro (EBI)DH-domain    PH_dom-like    PH_domain    SH3_domain   
Domain families : Pfam (Sanger)PH (PF00169)    RhoGEF (PF00621)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00169    pfam00621    pfam00018   
Domain families : Smart (EMBL)PH (SM00233)  RhoGEF (SM00325)  SH3 (SM00326)  
Conserved Domain (NCBI)SPATA13
DMDM Disease mutations221178
Blocks (Seattle)SPATA13
SuperfamilyQ96N96
Human Protein AtlasENSG00000182957
Peptide AtlasQ96N96
HPRD15427
IPIIPI00043546   IPI00916567   IPI00479471   IPI01011657   IPI00908977   IPI00916368   IPI00917793   IPI00917127   
Protein Interaction databases
DIP (DOE-UCLA)Q96N96
IntAct (EBI)Q96N96
FunCoupENSG00000182957
BioGRIDSPATA13
STRING (EMBL)SPATA13
ZODIACSPATA13
Ontologies - Pathways
QuickGOQ96N96
Ontology : AmiGOguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  nucleoplasm  cytoplasm  cell migration  lamellipodium  lamellipodium assembly  filopodium  regulation of cell migration  Rac guanyl-nucleotide exchange factor activity  Rac guanyl-nucleotide exchange factor activity  ruffle membrane  regulation of Rho protein signal transduction  positive regulation of GTPase activity  positive regulation of GTPase activity  positive regulation of GTPase activity  filopodium assembly  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  guanyl-nucleotide exchange factor activity  protein binding  nucleoplasm  cytoplasm  cell migration  lamellipodium  lamellipodium assembly  filopodium  regulation of cell migration  Rac guanyl-nucleotide exchange factor activity  Rac guanyl-nucleotide exchange factor activity  ruffle membrane  regulation of Rho protein signal transduction  positive regulation of GTPase activity  positive regulation of GTPase activity  positive regulation of GTPase activity  filopodium assembly  
NDEx NetworkSPATA13
Atlas of Cancer Signalling NetworkSPATA13
Wikipedia pathwaysSPATA13
Orthology - Evolution
OrthoDB221178
GeneTree (enSembl)ENSG00000182957
Phylogenetic Trees/Animal Genes : TreeFamSPATA13
HOVERGENQ96N96
HOGENOMQ96N96
Homologs : HomoloGeneSPATA13
Homology/Alignments : Family Browser (UCSC)SPATA13
Gene fusions - Rearrangements
Fusion : MitelmanSPATA13/PRRC2C [13q12.12/1q24.3]  
Fusion: TCGASPATA13 13q12.12 PRRC2C 1q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA13
dbVarSPATA13
ClinVarSPATA13
1000_GenomesSPATA13 
Exome Variant ServerSPATA13
ExAC (Exome Aggregation Consortium)SPATA13 (select the gene name)
Genetic variants : HAPMAP221178
Genomic Variants (DGV)SPATA13 [DGVbeta]
DECIPHER (Syndromes)13:24734855-24881212  ENSG00000182957
CONAN: Copy Number AnalysisSPATA13 
Mutations
ICGC Data PortalSPATA13 
TCGA Data PortalSPATA13 
Broad Tumor PortalSPATA13
OASIS PortalSPATA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA13
DgiDB (Drug Gene Interaction Database)SPATA13
DoCM (Curated mutations)SPATA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA13 (select a term)
intoGenSPATA13
Cancer3DSPATA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613324   
Orphanet
MedgenSPATA13
Genetic Testing Registry SPATA13
NextProtQ96N96 [Medical]
TSGene221178
GENETestsSPATA13
Huge Navigator SPATA13 [HugePedia]
snp3D : Map Gene to Disease221178
BioCentury BCIQSPATA13
ClinGenSPATA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221178
Chemical/Pharm GKB GenePA134912609
Clinical trialSPATA13
Miscellaneous
canSAR (ICR)SPATA13 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA13
EVEXSPATA13
GoPubMedSPATA13
iHOPSPATA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:49 CET 2017

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