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SPATA16 (spermatogenesis associated 16)

Identity

Alias_symbol (synonym)NYD-SP12
Other aliasSPGF6
HGNC (Hugo) SPATA16
LocusID (NCBI) 83893
Atlas_Id 54657
Location 3q26.31  [Link to chromosome band 3q26]
Location_base_pair Starts at 172889357 and ends at 173141268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FNDC3B (3q26.31) / SPATA16 (3q26.31)LPP (3q28) / SPATA16 (3q26.31)NCEH1 (3q26.31) / SPATA16 (3q26.31)
SPATA16 (3q26.31) / TTC28 (22q12.1)TMEM131 (2q11.2) / SPATA16 (3q26.31)FNDC3B 3q26.31 / SPATA16 3q26.31
LPP 3q28 / SPATA16 3q26.31NCEH1 3q26.31 / SPATA16 3q26.31TMEM131 2q11.2 / SPATA16 3q26.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA16   29935
Cards
Entrez_Gene (NCBI)SPATA16  83893  spermatogenesis associated 16
AliasesNYD-SP12; SPGF6
GeneCards (Weizmann)SPATA16
Ensembl hg19 (Hinxton)ENSG00000144962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144962 [Gene_View]  chr3:172889357-173141268 [Contig_View]  SPATA16 [Vega]
ICGC DataPortalENSG00000144962
TCGA cBioPortalSPATA16
AceView (NCBI)SPATA16
Genatlas (Paris)SPATA16
WikiGenes83893
SOURCE (Princeton)SPATA16
Genetics Home Reference (NIH)SPATA16
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA16  -     chr3:172889357-173141268 -  3q26.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA16  -     3q26.31   [Description]    (hg19-Feb_2009)
EnsemblSPATA16 - 3q26.31 [CytoView hg19]  SPATA16 - 3q26.31 [CytoView hg38]
Mapping of homologs : NCBISPATA16 [Mapview hg19]  SPATA16 [Mapview hg38]
OMIM102530   609856   
Gene and transcription
Genbank (Entrez)AF345909 AF404758 AK093041 BC034496 BI829426
RefSeq transcript (Entrez)NM_031955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA16
Cluster EST : UnigeneHs.444236 [ NCBI ]
CGAP (NCI)Hs.444236
Alternative Splicing GalleryENSG00000144962
Gene ExpressionSPATA16 [ NCBI-GEO ]   SPATA16 [ EBI - ARRAY_EXPRESS ]   SPATA16 [ SEEK ]   SPATA16 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83893
GTEX Portal (Tissue expression)SPATA16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXB7
Splice isoforms : SwissVarQ9BXB7
PhosPhoSitePlusQ9BXB7
Domains : Interpro (EBI)SPATA16    TPR-like_helical_dom   
Domain families : Pfam (Sanger)NYD-SP12_N (PF15015)   
Domain families : Pfam (NCBI)pfam15015   
Conserved Domain (NCBI)SPATA16
DMDM Disease mutations83893
Blocks (Seattle)SPATA16
SuperfamilyQ9BXB7
Human Protein AtlasENSG00000144962
Peptide AtlasQ9BXB7
HPRD11408
IPIIPI00302135   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXB7
IntAct (EBI)Q9BXB7
FunCoupENSG00000144962
BioGRIDSPATA16
STRING (EMBL)SPATA16
ZODIACSPATA16
Ontologies - Pathways
QuickGOQ9BXB7
Ontology : AmiGOGolgi apparatus  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIGolgi apparatus  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA16
Atlas of Cancer Signalling NetworkSPATA16
Wikipedia pathwaysSPATA16
Orthology - Evolution
OrthoDB83893
GeneTree (enSembl)ENSG00000144962
Phylogenetic Trees/Animal Genes : TreeFamSPATA16
HOVERGENQ9BXB7
HOGENOMQ9BXB7
Homologs : HomoloGeneSPATA16
Homology/Alignments : Family Browser (UCSC)SPATA16
Gene fusions - Rearrangements
Fusion : MitelmanFNDC3B/SPATA16 [3q26.31/3q26.31]  [t(3;3)(q26;q26)]  
Fusion : MitelmanLPP/SPATA16 [3q28/3q26.31]  [t(3;3)(q26;q28)]  
Fusion : MitelmanNCEH1/SPATA16 [3q26.31/3q26.31]  [t(3;3)(q26;q26)]  
Fusion : MitelmanSPATA16/TTC28 [3q26.31/22q12.1]  [t(3;22)(q26;q12)]  
Fusion : MitelmanTMEM131/SPATA16 [2q11.2/3q26.31]  [t(2;3)(q11;q26)]  
Fusion: TCGAFNDC3B 3q26.31 SPATA16 3q26.31 LUSC
Fusion: TCGALPP 3q28 SPATA16 3q26.31 BRCA
Fusion: TCGANCEH1 3q26.31 SPATA16 3q26.31 HNSC
Fusion: TCGATMEM131 2q11.2 SPATA16 3q26.31 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA16
dbVarSPATA16
ClinVarSPATA16
1000_GenomesSPATA16 
Exome Variant ServerSPATA16
ExAC (Exome Aggregation Consortium)SPATA16 (select the gene name)
Genetic variants : HAPMAP83893
Genomic Variants (DGV)SPATA16 [DGVbeta]
DECIPHERSPATA16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA16 
Mutations
ICGC Data PortalSPATA16 
TCGA Data PortalSPATA16 
Broad Tumor PortalSPATA16
OASIS PortalSPATA16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA16
DgiDB (Drug Gene Interaction Database)SPATA16
DoCM (Curated mutations)SPATA16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA16 (select a term)
intoGenSPATA16
Cancer3DSPATA16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM102530    609856   
Orphanet17932   
MedgenSPATA16
Genetic Testing Registry SPATA16
NextProtQ9BXB7 [Medical]
TSGene83893
GENETestsSPATA16
Target ValidationSPATA16
Huge Navigator SPATA16 [HugePedia]
snp3D : Map Gene to Disease83893
BioCentury BCIQSPATA16
ClinGenSPATA16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83893
Chemical/Pharm GKB GenePA134942358
Clinical trialSPATA16
Miscellaneous
canSAR (ICR)SPATA16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA16
EVEXSPATA16
GoPubMedSPATA16
iHOPSPATA16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:08:16 CEST 2017

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