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SPATA17 (spermatogenesis associated 17)

Identity

Alias_symbol (synonym)IQCH
Other aliasMSRG-11
MSRG11
HGNC (Hugo) SPATA17
LocusID (NCBI) 128153
Atlas_Id 74118
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 217804666 and ends at 218041495 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPATA17 (1q41) / SPATA17 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA17   25184
Cards
Entrez_Gene (NCBI)SPATA17  128153  spermatogenesis associated 17
AliasesIQCH; MSRG-11; MSRG11
GeneCards (Weizmann)SPATA17
Ensembl hg19 (Hinxton) [Gene_View]  chr1:217804666-218041495 [Contig_View]  SPATA17 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:217804666-218041495 [Contig_View]  SPATA17 [Vega]
TCGA cBioPortalSPATA17
AceView (NCBI)SPATA17
Genatlas (Paris)SPATA17
WikiGenes128153
SOURCE (Princeton)SPATA17
Genetics Home Reference (NIH)SPATA17
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA17  -     chr1:217804666-218041495 +  1q41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA17  -     1q41   [Description]    (hg38-Dec_2013)
EnsemblSPATA17 - 1q41 [CytoView hg19]  SPATA17 - 1q41 [CytoView hg38]
Mapping of homologs : NCBISPATA17 [Mapview hg19]  SPATA17 [Mapview hg38]
OMIM611032   
Gene and transcription
Genbank (Entrez)AK098591 AK310291 AY963797 BC014608 BX109478
RefSeq transcript (Entrez)NM_138796
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)SPATA17
Cluster EST : UnigeneHs.665237 [ NCBI ]
CGAP (NCI)Hs.665237
Gene ExpressionSPATA17 [ NCBI-GEO ]   SPATA17 [ EBI - ARRAY_EXPRESS ]   SPATA17 [ SEEK ]   SPATA17 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128153
GTEX Portal (Tissue expression)SPATA17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L03
Splice isoforms : SwissVarQ96L03
PhosPhoSitePlusQ96L03
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)SPATA17
DMDM Disease mutations128153
Blocks (Seattle)SPATA17
SuperfamilyQ96L03
Peptide AtlasQ96L03
HPRD14039
IPIIPI00064710   
Protein Interaction databases
DIP (DOE-UCLA)Q96L03
IntAct (EBI)Q96L03
BioGRIDSPATA17
STRING (EMBL)SPATA17
ZODIACSPATA17
Ontologies - Pathways
QuickGOQ96L03
Ontology : AmiGOcalmodulin binding  cytoplasm  
Ontology : EGO-EBIcalmodulin binding  cytoplasm  
NDEx NetworkSPATA17
Atlas of Cancer Signalling NetworkSPATA17
Wikipedia pathwaysSPATA17
Orthology - Evolution
OrthoDB128153
Phylogenetic Trees/Animal Genes : TreeFamSPATA17
HOVERGENQ96L03
HOGENOMQ96L03
Homologs : HomoloGeneSPATA17
Homology/Alignments : Family Browser (UCSC)SPATA17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA17
dbVarSPATA17
ClinVarSPATA17
1000_GenomesSPATA17 
Exome Variant ServerSPATA17
ExAC (Exome Aggregation Consortium)SPATA17 (select the gene name)
Genetic variants : HAPMAP128153
Genomic Variants (DGV)SPATA17 [DGVbeta]
DECIPHER (Syndromes)1:217804666-218041495  
CONAN: Copy Number AnalysisSPATA17 
Mutations
ICGC Data PortalSPATA17 
TCGA Data PortalSPATA17 
Broad Tumor PortalSPATA17
OASIS PortalSPATA17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA17
DgiDB (Drug Gene Interaction Database)SPATA17
DoCM (Curated mutations)SPATA17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA17 (select a term)
intoGenSPATA17
Cancer3DSPATA17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611032   
Orphanet
MedgenSPATA17
Genetic Testing Registry SPATA17
NextProtQ96L03 [Medical]
TSGene128153
GENETestsSPATA17
Huge Navigator SPATA17 [HugePedia]
snp3D : Map Gene to Disease128153
BioCentury BCIQSPATA17
ClinGenSPATA17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128153
Chemical/Pharm GKB GenePA144596270
Clinical trialSPATA17
Miscellaneous
canSAR (ICR)SPATA17 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA17
EVEXSPATA17
GoPubMedSPATA17
iHOPSPATA17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:18 CET 2017

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