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SPATA18 (spermatogenesis associated 18)

Identity

Alias_namesspermatogenesis associated 18 homolog (rat)
Alias_symbol (synonym)FLJ32906
Other aliasMieap
SPETEX1
HGNC (Hugo) SPATA18
LocusID (NCBI) 132671
Atlas_Id 52741
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 52917497 and ends at 52963471 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYTH3 (7p22.1) / SPATA18 (4q12)SGCB (4q12) / SPATA18 (4q12)SPATA18 (4q12) / EXOC1 (4q12)
CYTH3 7p22.1 / SPATA18 4q12SGCB 4q12 / SPATA18 4q12SPATA18 4q12 / EXOC1 4q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA18   29579
Cards
Entrez_Gene (NCBI)SPATA18  132671  spermatogenesis associated 18
AliasesMieap; SPETEX1
GeneCards (Weizmann)SPATA18
Ensembl hg19 (Hinxton)ENSG00000163071 [Gene_View]  chr4:52917497-52963471 [Contig_View]  SPATA18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163071 [Gene_View]  chr4:52917497-52963471 [Contig_View]  SPATA18 [Vega]
ICGC DataPortalENSG00000163071
TCGA cBioPortalSPATA18
AceView (NCBI)SPATA18
Genatlas (Paris)SPATA18
WikiGenes132671
SOURCE (Princeton)SPATA18
Genetics Home Reference (NIH)SPATA18
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA18  -     chr4:52917497-52963471 +  4q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA18  -     4q12   [Description]    (hg38-Dec_2013)
EnsemblSPATA18 - 4q12 [CytoView hg19]  SPATA18 - 4q12 [CytoView hg38]
Mapping of homologs : NCBISPATA18 [Mapview hg19]  SPATA18 [Mapview hg38]
OMIM612814   
Gene and transcription
Genbank (Entrez)AB465501 AB465502 AI339078 AK057468 AK098625
RefSeq transcript (Entrez)NM_001297608 NM_145263
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_022853 NW_004929319
Consensus coding sequences : CCDS (NCBI)SPATA18
Cluster EST : UnigeneHs.527090 [ NCBI ]
CGAP (NCI)Hs.527090
Alternative Splicing GalleryENSG00000163071
Gene ExpressionSPATA18 [ NCBI-GEO ]   SPATA18 [ EBI - ARRAY_EXPRESS ]   SPATA18 [ SEEK ]   SPATA18 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132671
GTEX Portal (Tissue expression)SPATA18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC71
Splice isoforms : SwissVarQ8TC71
PhosPhoSitePlusQ8TC71
Domains : Interpro (EBI)MIEAP    MIEAP_C   
Domain families : Pfam (Sanger)MIEAP (PF16026)   
Domain families : Pfam (NCBI)pfam16026   
Conserved Domain (NCBI)SPATA18
DMDM Disease mutations132671
Blocks (Seattle)SPATA18
SuperfamilyQ8TC71
Human Protein AtlasENSG00000163071
Peptide AtlasQ8TC71
HPRD14050
IPIIPI00152295   IPI00909098   IPI00387042   IPI00965989   IPI00965690   IPI00966759   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC71
IntAct (EBI)Q8TC71
FunCoupENSG00000163071
BioGRIDSPATA18
STRING (EMBL)SPATA18
ZODIACSPATA18
Ontologies - Pathways
QuickGOQ8TC71
Ontology : AmiGOprotein binding  cytoplasm  mitochondrial outer membrane  cellular response to DNA damage stimulus  mitochondrial protein catabolic process  mitophagy by induced vacuole formation  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrial outer membrane  cellular response to DNA damage stimulus  mitochondrial protein catabolic process  mitophagy by induced vacuole formation  intracellular membrane-bounded organelle  
NDEx NetworkSPATA18
Atlas of Cancer Signalling NetworkSPATA18
Wikipedia pathwaysSPATA18
Orthology - Evolution
OrthoDB132671
GeneTree (enSembl)ENSG00000163071
Phylogenetic Trees/Animal Genes : TreeFamSPATA18
HOVERGENQ8TC71
HOGENOMQ8TC71
Homologs : HomoloGeneSPATA18
Homology/Alignments : Family Browser (UCSC)SPATA18
Gene fusions - Rearrangements
Fusion : MitelmanCYTH3/SPATA18 [7p22.1/4q12]  [t(4;7)(q12;p22)]  
Fusion: TCGACYTH3 7p22.1 SPATA18 4q12 LUAD
Fusion: TCGASGCB 4q12 SPATA18 4q12 LUSC
Fusion: TCGASPATA18 4q12 EXOC1 4q12 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA18
dbVarSPATA18
ClinVarSPATA18
1000_GenomesSPATA18 
Exome Variant ServerSPATA18
ExAC (Exome Aggregation Consortium)SPATA18 (select the gene name)
Genetic variants : HAPMAP132671
Genomic Variants (DGV)SPATA18 [DGVbeta]
DECIPHER (Syndromes)4:52917497-52963471  ENSG00000163071
CONAN: Copy Number AnalysisSPATA18 
Mutations
ICGC Data PortalSPATA18 
TCGA Data PortalSPATA18 
Broad Tumor PortalSPATA18
OASIS PortalSPATA18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA18
DgiDB (Drug Gene Interaction Database)SPATA18
DoCM (Curated mutations)SPATA18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA18 (select a term)
intoGenSPATA18
Cancer3DSPATA18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612814   
Orphanet
MedgenSPATA18
Genetic Testing Registry SPATA18
NextProtQ8TC71 [Medical]
TSGene132671
GENETestsSPATA18
Huge Navigator SPATA18 [HugePedia]
snp3D : Map Gene to Disease132671
BioCentury BCIQSPATA18
ClinGenSPATA18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132671
Chemical/Pharm GKB GenePA142670883
Clinical trialSPATA18
Miscellaneous
canSAR (ICR)SPATA18 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA18
EVEXSPATA18
GoPubMedSPATA18
iHOPSPATA18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:49 CET 2017

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