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SPATA18 (spermatogenesis associated 18)

Identity

Other namesMieap
SPETEX1
HGNC (Hugo) SPATA18
LocusID (NCBI) 132671
Location 4q12
Location_base_pair Starts at 52917593 and ends at 52963458 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SPATA18   29579
Entrez_Gene (NCBI)SPATA18  132671  spermatogenesis associated 18
Cards
GeneCards (Weizmann)SPATA18
Ensembl (Hinxton)ENSG00000163071 [Gene_View]  chr4:52917593-52963458 [Contig_View]  SPATA18 [Vega]
AceView (NCBI)SPATA18
Genatlas (Paris)SPATA18
SOURCE (Stanford)NM_145263
Genomic and cartography
GoldenPath (UCSC)SPATA18  -  4q12   chr4:52917593-52963458 +  4q12   [Description]    (hg19-Feb_2009)
EnsemblSPATA18 - 4q12 [CytoView]
Mapping of homologs : NCBISPATA18 [Mapview]
OMIM612814   
Gene and transcription
Genbank (Entrez)AB465501 AB465502 AK057468 AK098625 AK304386
RefSeq transcript (SRS)NM_145263
RefSeq transcript (Entrez)NM_145263
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
Consensus coding sequences : CCDS (NCBI)SPATA18
Cluster EST : UnigeneHs.527090 [ SRS ] Hs.527090 [ NCBI ]
CGAP (NCI)Hs.527090
Alternative Splicing : Fast-db (Paris)GSHG0022584
Alternative Splicing GalleryENSG00000163071
Gene ExpressionSPATA18 [ NCBI-GEO ]   SPATA18 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC71 (SRS) Q8TC71 (Uniprot)
NextProtQ8TC71
With graphics : InterProQ8TC71
Splice isoforms : SwissVarQ8TC71(Swissvar)
Domains : Interpro (SRS)MIEAP   
Domains : Interpro (EBI)MIEAP   
Related proteins : CluSTrQ8TC71
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM132671
Blocks (Seattle)Q8TC71
Human Protein AtlasENSG00000163071
HPRD14050
IPIIPI00152295   IPI00909098   IPI00387042   IPI00965989   IPI00965690   IPI00966759   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC71
IntAct (EBI)Q8TC71
FunCoupENSG00000163071
REACTOMESPATA18
Protein Interaction Database132671
BioGRIDSPATA18
InParanoidQ8TC71
Interologous Interaction database Q8TC71
IntegromeDBSPATA18
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SPATA18
SNP (GeneSNP Utah)SPATA18
SNP : HGBaseSPATA18
Genetic variants : HAPMAPSPATA18
Somatic Mutations in Cancer : COSMICSPATA18 
CONAN: Copy Number AnalysisSPATA18 
Mutations and Diseases : HGMDSPATA18
OMIM612814   
GENETests612814   
Disease Genetic AssociationSPATA18
Huge Navigator SPATA18 [HugePedia]  SPATA18 [HugeCancerGEM]
Genomic VariantsSPATA18  SPATA18 [DGVbeta]
snp3D : Map Gene to Disease132671
General knowledge
Homologs : HomoloGeneSPATA18
Homology/Alignments : Family Browser (UCSC)SPATA18
Phylogenetic Trees/Animal Genes : TreeFamSPATA18
Chemical/Protein Interactions : CTD132671
Chemical/Pharm GKB GenePA142670883
Clinical trialSPATA18
Cancer Resource (Charite)ENSG00000163071
Ontology : AmiGOprotein binding  cytoplasm  mitochondrial outer membrane  response to DNA damage stimulus  cellular response to stress  mitochondrial protein catabolic process  mitochondrion degradation by induced vacuole formation  intracellular membrane-bounded organelle  axoneme part  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrial outer membrane  response to DNA damage stimulus  cellular response to stress  mitochondrial protein catabolic process  mitochondrion degradation by induced vacuole formation  intracellular membrane-bounded organelle  axoneme part  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneSPATA18
iHOPSPATA18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:22:05 CEST 2013
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