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SPATA2 (spermatogenesis associated 2)

Identity

Alias_namesregulatory subunit 145
Alias_symbol (synonym)KIAA0757
PD1
tamo
PPP1R145
Other alias
HGNC (Hugo) SPATA2
LocusID (NCBI) 9825
Atlas_Id 51535
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49903391 and ends at 49913739 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA2   14681
Cards
Entrez_Gene (NCBI)SPATA2  9825  spermatogenesis associated 2
AliasesPD1; PPP1R145; tamo
GeneCards (Weizmann)SPATA2
Ensembl hg19 (Hinxton)ENSG00000158480 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158480 [Gene_View]  chr20:49903391-49913739 [Contig_View]  SPATA2 [Vega]
ICGC DataPortalENSG00000158480
TCGA cBioPortalSPATA2
AceView (NCBI)SPATA2
Genatlas (Paris)SPATA2
WikiGenes9825
SOURCE (Princeton)SPATA2
Genetics Home Reference (NIH)SPATA2
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA2  -     chr20:49903391-49913739 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA2  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblSPATA2 - 20q13.13 [CytoView hg19]  SPATA2 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBISPATA2 [Mapview hg19]  SPATA2 [Mapview hg38]
OMIM607662   
Gene and transcription
Genbank (Entrez)AB018300 AK023229 AK289644 AK295536 BC009481
RefSeq transcript (Entrez)NM_001135773 NM_006038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA2
Cluster EST : UnigeneHs.48513 [ NCBI ]
CGAP (NCI)Hs.48513
Alternative Splicing GalleryENSG00000158480
Gene ExpressionSPATA2 [ NCBI-GEO ]   SPATA2 [ EBI - ARRAY_EXPRESS ]   SPATA2 [ SEEK ]   SPATA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9825
GTEX Portal (Tissue expression)SPATA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UM82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UM82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UM82
Splice isoforms : SwissVarQ9UM82
PhosPhoSitePlusQ9UM82
Domains : Interpro (EBI)SPATA2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA2
DMDM Disease mutations9825
Blocks (Seattle)SPATA2
PDB (SRS)5LJM    5LJN   
PDB (PDBSum)5LJM    5LJN   
PDB (IMB)5LJM    5LJN   
PDB (RSDB)5LJM    5LJN   
Structural Biology KnowledgeBase5LJM    5LJN   
SCOP (Structural Classification of Proteins)5LJM    5LJN   
CATH (Classification of proteins structures)5LJM    5LJN   
SuperfamilyQ9UM82
Human Protein AtlasENSG00000158480
Peptide AtlasQ9UM82
HPRD09636
IPIIPI00008513   IPI01011717   
Protein Interaction databases
DIP (DOE-UCLA)Q9UM82
IntAct (EBI)Q9UM82
FunCoupENSG00000158480
BioGRIDSPATA2
STRING (EMBL)SPATA2
ZODIACSPATA2
Ontologies - Pathways
QuickGOQ9UM82
Ontology : AmiGOfibrillar center  molecular_function  protein binding  nucleus  cytoplasm  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIfibrillar center  molecular_function  protein binding  nucleus  cytoplasm  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA2
Atlas of Cancer Signalling NetworkSPATA2
Wikipedia pathwaysSPATA2
Orthology - Evolution
OrthoDB9825
GeneTree (enSembl)ENSG00000158480
Phylogenetic Trees/Animal Genes : TreeFamSPATA2
HOVERGENQ9UM82
HOGENOMQ9UM82
Homologs : HomoloGeneSPATA2
Homology/Alignments : Family Browser (UCSC)SPATA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA2
dbVarSPATA2
ClinVarSPATA2
1000_GenomesSPATA2 
Exome Variant ServerSPATA2
ExAC (Exome Aggregation Consortium)SPATA2 (select the gene name)
Genetic variants : HAPMAP9825
Genomic Variants (DGV)SPATA2 [DGVbeta]
DECIPHERSPATA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA2 
Mutations
ICGC Data PortalSPATA2 
TCGA Data PortalSPATA2 
Broad Tumor PortalSPATA2
OASIS PortalSPATA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA2
DgiDB (Drug Gene Interaction Database)SPATA2
DoCM (Curated mutations)SPATA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA2 (select a term)
intoGenSPATA2
Cancer3DSPATA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607662   
Orphanet
MedgenSPATA2
Genetic Testing Registry SPATA2
NextProtQ9UM82 [Medical]
TSGene9825
GENETestsSPATA2
Target ValidationSPATA2
Huge Navigator SPATA2 [HugePedia]
snp3D : Map Gene to Disease9825
BioCentury BCIQSPATA2
ClinGenSPATA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9825
Chemical/Pharm GKB GenePA37909
Clinical trialSPATA2
Miscellaneous
canSAR (ICR)SPATA2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA2
EVEXSPATA2
GoPubMedSPATA2
iHOPSPATA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:05 CEST 2017

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