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SPATA20 (spermatogenesis associated 20)

Identity

Alias_symbol (synonym)FLJ21347
SSP411
Tisp78
Other aliasHEL-S-98
HGNC (Hugo) SPATA20
LocusID (NCBI) 64847
Atlas_Id 53327
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50547089 and ends at 50555852 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLII (17p11.2) / SPATA20 (17q21.33)RMI2 (16p13.13) / SPATA20 (17q21.33)SPATA20 (17q21.33) / SPATA20 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA20   26125
Cards
Entrez_Gene (NCBI)SPATA20  64847  spermatogenesis associated 20
AliasesHEL-S-98; SSP411; Tisp78
GeneCards (Weizmann)SPATA20
Ensembl hg19 (Hinxton)ENSG00000006282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006282 [Gene_View]  ENSG00000006282 [Sequence]  chr17:50547089-50555852 [Contig_View]  SPATA20 [Vega]
ICGC DataPortalENSG00000006282
TCGA cBioPortalSPATA20
AceView (NCBI)SPATA20
Genatlas (Paris)SPATA20
WikiGenes64847
SOURCE (Princeton)SPATA20
Genetics Home Reference (NIH)SPATA20
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA20  -     chr17:50547089-50555852 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA20  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblSPATA20 - 20q13.13 [CytoView hg19]  SPATA20 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBISPATA20 [Mapview hg19]  SPATA20 [Mapview hg38]
OMIM613939   
Gene and transcription
Genbank (Entrez)AF086245 AK025000 AK025622 AK092731 AK125807
RefSeq transcript (Entrez)NM_001258372 NM_001258373 NM_022827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA20
Cluster EST : UnigeneHs.103147 [ NCBI ]
CGAP (NCI)Hs.103147
Alternative Splicing GalleryENSG00000006282
Gene ExpressionSPATA20 [ NCBI-GEO ]   SPATA20 [ EBI - ARRAY_EXPRESS ]   SPATA20 [ SEEK ]   SPATA20 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64847
GTEX Portal (Tissue expression)SPATA20
Human Protein AtlasENSG00000006282-SPATA20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB22
Splice isoforms : SwissVarQ8TB22
PhosPhoSitePlusQ8TB22
Domains : Interpro (EBI)6-hairpin_glycosidase_sf    6hp_glycosidase-like_sf    DUF255    Ssp411    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)Thioredox_DsbH (PF03190)   
Domain families : Pfam (NCBI)pfam03190   
Conserved Domain (NCBI)SPATA20
DMDM Disease mutations64847
Blocks (Seattle)SPATA20
SuperfamilyQ8TB22
Human Protein Atlas [tissue]ENSG00000006282-SPATA20 [tissue]
Peptide AtlasQ8TB22
HPRD07961
IPIIPI00335497   IPI00154567   IPI00827778   IPI00828067   IPI00908737   IPI00816652   IPI00967192   IPI00967946   IPI00963970   IPI00966699   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB22
IntAct (EBI)Q8TB22
FunCoupENSG00000006282
BioGRIDSPATA20
STRING (EMBL)SPATA20
ZODIACSPATA20
Ontologies - Pathways
QuickGOQ8TB22
Ontology : AmiGOcatalytic activity  extracellular region  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIcatalytic activity  extracellular region  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA20
Atlas of Cancer Signalling NetworkSPATA20
Wikipedia pathwaysSPATA20
Orthology - Evolution
OrthoDB64847
GeneTree (enSembl)ENSG00000006282
Phylogenetic Trees/Animal Genes : TreeFamSPATA20
HOVERGENQ8TB22
HOGENOMQ8TB22
Homologs : HomoloGeneSPATA20
Homology/Alignments : Family Browser (UCSC)SPATA20
Gene fusions - Rearrangements
Fusion : QuiverSPATA20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA20
dbVarSPATA20
ClinVarSPATA20
1000_GenomesSPATA20 
Exome Variant ServerSPATA20
ExAC (Exome Aggregation Consortium)ENSG00000006282
GNOMAD BrowserENSG00000006282
Varsome BrowserSPATA20
Genetic variants : HAPMAP64847
Genomic Variants (DGV)SPATA20 [DGVbeta]
DECIPHERSPATA20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA20 
Mutations
ICGC Data PortalSPATA20 
TCGA Data PortalSPATA20 
Broad Tumor PortalSPATA20
OASIS PortalSPATA20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA20
DgiDB (Drug Gene Interaction Database)SPATA20
DoCM (Curated mutations)SPATA20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA20 (select a term)
intoGenSPATA20
Cancer3DSPATA20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613939   
Orphanet
DisGeNETSPATA20
MedgenSPATA20
Genetic Testing Registry SPATA20
NextProtQ8TB22 [Medical]
TSGene64847
GENETestsSPATA20
Target ValidationSPATA20
Huge Navigator SPATA20 [HugePedia]
snp3D : Map Gene to Disease64847
BioCentury BCIQSPATA20
ClinGenSPATA20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64847
Chemical/Pharm GKB GenePA142670885
Clinical trialSPATA20
Miscellaneous
canSAR (ICR)SPATA20 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA20
EVEXSPATA20
GoPubMedSPATA20
iHOPSPATA20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 11:33:58 CEST 2018

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