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SPATA20 (spermatogenesis associated 20)

Identity

Alias (NCBI)HEL-S-98
SSP411
Tisp78
HGNC (Hugo) SPATA20
HGNC Alias symbFLJ21347
SSP411
Tisp78
HGNC Alias namehypothetical protein FLJ21347
LocusID (NCBI) 64847
Atlas_Id 53327
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50547174 and ends at 50555852 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLII (17p11.2) / SPATA20 (17q21.33)RMI2 (16p13.13) / SPATA20 (17q21.33)SPATA20 (17q21.33) / SPATA20 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA20   26125
Cards
Entrez_Gene (NCBI)SPATA20    spermatogenesis associated 20
AliasesHEL-S-98; SSP411; Tisp78
GeneCards (Weizmann)SPATA20
Ensembl hg19 (Hinxton)ENSG00000006282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006282 [Gene_View]  ENSG00000006282 [Sequence]  chr17:50547174-50555852 [Contig_View]  SPATA20 [Vega]
ICGC DataPortalENSG00000006282
TCGA cBioPortalSPATA20
AceView (NCBI)SPATA20
Genatlas (Paris)SPATA20
SOURCE (Princeton)SPATA20
Genetics Home Reference (NIH)SPATA20
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA20  -     chr17:50547174-50555852 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA20  -     17q21.33   [Description]    (hg19-Feb_2009)
GoldenPathSPATA20 - 17q21.33 [CytoView hg19]  SPATA20 - 17q21.33 [CytoView hg38]
ImmunoBaseENSG00000006282
Genome Data Viewer NCBISPATA20 [Mapview hg19]  
OMIM613939   
Gene and transcription
Genbank (Entrez)AF086245 AK025000 AK025622 AK092731 AK125807
RefSeq transcript (Entrez)NM_001258372 NM_001258373 NM_022827
Consensus coding sequences : CCDS (NCBI)SPATA20
Gene ExpressionSPATA20 [ NCBI-GEO ]   SPATA20 [ EBI - ARRAY_EXPRESS ]   SPATA20 [ SEEK ]   SPATA20 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA20 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64847
GTEX Portal (Tissue expression)SPATA20
Human Protein AtlasENSG00000006282-SPATA20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB22
PhosPhoSitePlusQ8TB22
Domains : Interpro (EBI)6-hairpin_glycosidase_sf    6hp_glycosidase-like_sf    DUF255    Ssp411    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)Thioredox_DsbH (PF03190)   
Domain families : Pfam (NCBI)pfam03190   
Conserved Domain (NCBI)SPATA20
SuperfamilyQ8TB22
AlphaFold pdb e-kbQ8TB22   
Human Protein Atlas [tissue]ENSG00000006282-SPATA20 [tissue]
HPRD07961
Protein Interaction databases
DIP (DOE-UCLA)Q8TB22
IntAct (EBI)Q8TB22
BioGRIDSPATA20
STRING (EMBL)SPATA20
ZODIACSPATA20
Ontologies - Pathways
QuickGOQ8TB22
Ontology : AmiGOextracellular region  carbohydrate metabolic process  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIextracellular region  carbohydrate metabolic process  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA20
Atlas of Cancer Signalling NetworkSPATA20
Wikipedia pathwaysSPATA20
Orthology - Evolution
OrthoDB64847
GeneTree (enSembl)ENSG00000006282
Phylogenetic Trees/Animal Genes : TreeFamSPATA20
Homologs : HomoloGeneSPATA20
Homology/Alignments : Family Browser (UCSC)SPATA20
Gene fusions - Rearrangements
Fusion : QuiverSPATA20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA20
dbVarSPATA20
ClinVarSPATA20
MonarchSPATA20
1000_GenomesSPATA20 
Exome Variant ServerSPATA20
GNOMAD BrowserENSG00000006282
Varsome BrowserSPATA20
ACMGSPATA20 variants
VarityQ8TB22
Genomic Variants (DGV)SPATA20 [DGVbeta]
DECIPHERSPATA20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA20 
Mutations
ICGC Data PortalSPATA20 
TCGA Data PortalSPATA20 
Broad Tumor PortalSPATA20
OASIS PortalSPATA20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATA20
Mutations and Diseases : HGMDSPATA20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA20
DgiDB (Drug Gene Interaction Database)SPATA20
DoCM (Curated mutations)SPATA20
CIViC (Clinical Interpretations of Variants in Cancer)SPATA20
Cancer3DSPATA20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613939   
Orphanet
DisGeNETSPATA20
MedgenSPATA20
Genetic Testing Registry SPATA20
NextProtQ8TB22 [Medical]
GENETestsSPATA20
Target ValidationSPATA20
Huge Navigator SPATA20 [HugePedia]
ClinGenSPATA20
Clinical trials, drugs, therapy
MyCancerGenomeSPATA20
Protein Interactions : CTDSPATA20
Pharm GKB GenePA142670885
PharosQ8TB22
Clinical trialSPATA20
Miscellaneous
canSAR (ICR)SPATA20
HarmonizomeSPATA20
DataMed IndexSPATA20
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:48 CEST 2021

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