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SPATA21 (spermatogenesis associated 21)

Identity

Alias_symbol (synonym)spergen-2
spergen2
Other alias
HGNC (Hugo) SPATA21
LocusID (NCBI) 374955
Atlas_Id 54658
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16398643 and ends at 16437424 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSNK1E (22q13.1) / SPATA21 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA21   28026
Cards
Entrez_Gene (NCBI)SPATA21  374955  spermatogenesis associated 21
Aliasesspergen-2; spergen2
GeneCards (Weizmann)SPATA21
Ensembl hg19 (Hinxton)ENSG00000187144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187144 [Gene_View]  chr1:16398643-16437424 [Contig_View]  SPATA21 [Vega]
ICGC DataPortalENSG00000187144
TCGA cBioPortalSPATA21
AceView (NCBI)SPATA21
Genatlas (Paris)SPATA21
WikiGenes374955
SOURCE (Princeton)SPATA21
Genetics Home Reference (NIH)SPATA21
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA21  -     chr1:16398643-16437424 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA21  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblSPATA21 - 1p36.13 [CytoView hg19]  SPATA21 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBISPATA21 [Mapview hg19]  SPATA21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128106 AK311614 AY327405 BC022039 BC150598
RefSeq transcript (Entrez)NM_198546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA21
Cluster EST : UnigeneHs.705501 [ NCBI ]
CGAP (NCI)Hs.705501
Alternative Splicing GalleryENSG00000187144
Gene ExpressionSPATA21 [ NCBI-GEO ]   SPATA21 [ EBI - ARRAY_EXPRESS ]   SPATA21 [ SEEK ]   SPATA21 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374955
GTEX Portal (Tissue expression)SPATA21
Human Protein AtlasENSG00000187144-SPATA21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z572   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z572  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z572
Splice isoforms : SwissVarQ7Z572
PhosPhoSitePlusQ7Z572
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)SPATA21
DMDM Disease mutations374955
Blocks (Seattle)SPATA21
SuperfamilyQ7Z572
Human Protein Atlas [tissue]ENSG00000187144-SPATA21 [tissue]
Peptide AtlasQ7Z572
HPRD14190
IPIIPI00844345   IPI00945190   IPI00966968   IPI00477205   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z572
IntAct (EBI)Q7Z572
FunCoupENSG00000187144
BioGRIDSPATA21
STRING (EMBL)SPATA21
ZODIACSPATA21
Ontologies - Pathways
QuickGOQ7Z572
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkSPATA21
Atlas of Cancer Signalling NetworkSPATA21
Wikipedia pathwaysSPATA21
Orthology - Evolution
OrthoDB374955
GeneTree (enSembl)ENSG00000187144
Phylogenetic Trees/Animal Genes : TreeFamSPATA21
HOVERGENQ7Z572
HOGENOMQ7Z572
Homologs : HomoloGeneSPATA21
Homology/Alignments : Family Browser (UCSC)SPATA21
Gene fusions - Rearrangements
Fusion : MitelmanCSNK1E/SPATA21 [22q13.1/1p36.13]  [t(1;22)(p36;q13)]  
Tumor Fusion PortalSPATA21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA21
dbVarSPATA21
ClinVarSPATA21
1000_GenomesSPATA21 
Exome Variant ServerSPATA21
ExAC (Exome Aggregation Consortium)ENSG00000187144
GNOMAD BrowserENSG00000187144
Genetic variants : HAPMAP374955
Genomic Variants (DGV)SPATA21 [DGVbeta]
DECIPHERSPATA21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA21 
Mutations
ICGC Data PortalSPATA21 
TCGA Data PortalSPATA21 
Broad Tumor PortalSPATA21
OASIS PortalSPATA21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA21
DgiDB (Drug Gene Interaction Database)SPATA21
DoCM (Curated mutations)SPATA21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA21 (select a term)
intoGenSPATA21
Cancer3DSPATA21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA21
MedgenSPATA21
Genetic Testing Registry SPATA21
NextProtQ7Z572 [Medical]
TSGene374955
GENETestsSPATA21
Target ValidationSPATA21
Huge Navigator SPATA21 [HugePedia]
snp3D : Map Gene to Disease374955
BioCentury BCIQSPATA21
ClinGenSPATA21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374955
Chemical/Pharm GKB GenePA142670886
Clinical trialSPATA21
Miscellaneous
canSAR (ICR)SPATA21 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA21
EVEXSPATA21
GoPubMedSPATA21
iHOPSPATA21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:10 CET 2017

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