Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPATA22 (spermatogenesis associated 22)

Identity

Alias_symbol (synonym)NYD-SP20
Other aliasNYDSP20
HGNC (Hugo) SPATA22
LocusID (NCBI) 84690
Atlas_Id 53472
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3343306 and ends at 3375142 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CAMK4 (5q22.1) / SPATA22 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA22   30705
Cards
Entrez_Gene (NCBI)SPATA22  84690  spermatogenesis associated 22
AliasesNYD-SP20; NYDSP20
GeneCards (Weizmann)SPATA22
Ensembl hg19 (Hinxton)ENSG00000141255 [Gene_View]  chr17:3343306-3375142 [Contig_View]  SPATA22 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141255 [Gene_View]  chr17:3343306-3375142 [Contig_View]  SPATA22 [Vega]
ICGC DataPortalENSG00000141255
TCGA cBioPortalSPATA22
AceView (NCBI)SPATA22
Genatlas (Paris)SPATA22
WikiGenes84690
SOURCE (Princeton)SPATA22
Genetics Home Reference (NIH)SPATA22
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA22  -     chr17:3343306-3375142 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA22  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblSPATA22 - 17p13.2 [CytoView hg19]  SPATA22 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISPATA22 [Mapview hg19]  SPATA22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF367472 AK057485 AK295299 AK301892 AY032684
RefSeq transcript (Entrez)NM_001170695 NM_001170696 NM_001170697 NM_001170698 NM_001170699 NM_001321336 NM_001321337 NM_032598
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SPATA22
Cluster EST : UnigeneHs.351068 [ NCBI ]
CGAP (NCI)Hs.351068
Alternative Splicing GalleryENSG00000141255
Gene ExpressionSPATA22 [ NCBI-GEO ]   SPATA22 [ EBI - ARRAY_EXPRESS ]   SPATA22 [ SEEK ]   SPATA22 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84690
GTEX Portal (Tissue expression)SPATA22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHS9
Splice isoforms : SwissVarQ8NHS9
PhosPhoSitePlusQ8NHS9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA22
DMDM Disease mutations84690
Blocks (Seattle)SPATA22
SuperfamilyQ8NHS9
Human Protein AtlasENSG00000141255
Peptide AtlasQ8NHS9
HPRD14862
IPIIPI00386437   IPI00186615   IPI01014253   IPI00954976   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHS9
IntAct (EBI)Q8NHS9
FunCoupENSG00000141255
BioGRIDSPATA22
STRING (EMBL)SPATA22
ZODIACSPATA22
Ontologies - Pathways
QuickGOQ8NHS9
Ontology : AmiGOmeiotic DNA repair synthesis  protein binding  chromosome  synapsis  gamete generation  fertilization  regulation of meiotic cell cycle  reproductive system development  
Ontology : EGO-EBImeiotic DNA repair synthesis  protein binding  chromosome  synapsis  gamete generation  fertilization  regulation of meiotic cell cycle  reproductive system development  
NDEx NetworkSPATA22
Atlas of Cancer Signalling NetworkSPATA22
Wikipedia pathwaysSPATA22
Orthology - Evolution
OrthoDB84690
GeneTree (enSembl)ENSG00000141255
Phylogenetic Trees/Animal Genes : TreeFamSPATA22
HOVERGENQ8NHS9
HOGENOMQ8NHS9
Homologs : HomoloGeneSPATA22
Homology/Alignments : Family Browser (UCSC)SPATA22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA22
dbVarSPATA22
ClinVarSPATA22
1000_GenomesSPATA22 
Exome Variant ServerSPATA22
ExAC (Exome Aggregation Consortium)SPATA22 (select the gene name)
Genetic variants : HAPMAP84690
Genomic Variants (DGV)SPATA22 [DGVbeta]
DECIPHER (Syndromes)17:3343306-3375142  ENSG00000141255
CONAN: Copy Number AnalysisSPATA22 
Mutations
ICGC Data PortalSPATA22 
TCGA Data PortalSPATA22 
Broad Tumor PortalSPATA22
OASIS PortalSPATA22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA22
DgiDB (Drug Gene Interaction Database)SPATA22
DoCM (Curated mutations)SPATA22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA22 (select a term)
intoGenSPATA22
Cancer3DSPATA22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA22
Genetic Testing Registry SPATA22
NextProtQ8NHS9 [Medical]
TSGene84690
GENETestsSPATA22
Huge Navigator SPATA22 [HugePedia]
snp3D : Map Gene to Disease84690
BioCentury BCIQSPATA22
ClinGenSPATA22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84690
Chemical/Pharm GKB GenePA142670887
Clinical trialSPATA22
Miscellaneous
canSAR (ICR)SPATA22 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA22
EVEXSPATA22
GoPubMedSPATA22
iHOPSPATA22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:50 CET 2017

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