Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA24 (spermatogenesis associated 24)

Identity

Alias_symbol (synonym)T6441
CCDC161
Other alias
HGNC (Hugo) SPATA24
LocusID (NCBI) 202051
Atlas_Id 74120
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139396767 and ends at 139404087 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA24   27322
Cards
Entrez_Gene (NCBI)SPATA24  202051  spermatogenesis associated 24
AliasesCCDC161; T6441
GeneCards (Weizmann)SPATA24
Ensembl hg19 (Hinxton)ENSG00000170469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170469 [Gene_View]  chr5:139396767-139404087 [Contig_View]  SPATA24 [Vega]
ICGC DataPortalENSG00000170469
TCGA cBioPortalSPATA24
AceView (NCBI)SPATA24
Genatlas (Paris)SPATA24
WikiGenes202051
SOURCE (Princeton)SPATA24
Genetics Home Reference (NIH)SPATA24
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA24  -     chr5:139396767-139404087 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA24  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblSPATA24 - 5q31.2 [CytoView hg19]  SPATA24 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBISPATA24 [Mapview hg19]  SPATA24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA399058 AK098740 BC040037 BC050563 BM785501
RefSeq transcript (Entrez)NM_194296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA24
Cluster EST : UnigeneHs.373612 [ NCBI ]
CGAP (NCI)Hs.373612
Alternative Splicing GalleryENSG00000170469
Gene ExpressionSPATA24 [ NCBI-GEO ]   SPATA24 [ EBI - ARRAY_EXPRESS ]   SPATA24 [ SEEK ]   SPATA24 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202051
GTEX Portal (Tissue expression)SPATA24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W54
Splice isoforms : SwissVarQ86W54
PhosPhoSitePlusQ86W54
Domains : Interpro (EBI)SPATA24   
Domain families : Pfam (Sanger)SPATA24 (PF15175)   
Domain families : Pfam (NCBI)pfam15175   
Conserved Domain (NCBI)SPATA24
DMDM Disease mutations202051
Blocks (Seattle)SPATA24
SuperfamilyQ86W54
Human Protein AtlasENSG00000170469
Peptide AtlasQ86W54
IPIIPI00940491   IPI00384366   IPI00297587   IPI00967733   IPI00966908   IPI00965981   IPI00965317   
Protein Interaction databases
DIP (DOE-UCLA)Q86W54
IntAct (EBI)Q86W54
FunCoupENSG00000170469
BioGRIDSPATA24
STRING (EMBL)SPATA24
ZODIACSPATA24
Ontologies - Pathways
QuickGOQ86W54
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  protein homodimerization activity  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  protein homodimerization activity  
NDEx NetworkSPATA24
Atlas of Cancer Signalling NetworkSPATA24
Wikipedia pathwaysSPATA24
Orthology - Evolution
OrthoDB202051
GeneTree (enSembl)ENSG00000170469
Phylogenetic Trees/Animal Genes : TreeFamSPATA24
HOVERGENQ86W54
HOGENOMQ86W54
Homologs : HomoloGeneSPATA24
Homology/Alignments : Family Browser (UCSC)SPATA24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA24
dbVarSPATA24
ClinVarSPATA24
1000_GenomesSPATA24 
Exome Variant ServerSPATA24
ExAC (Exome Aggregation Consortium)SPATA24 (select the gene name)
Genetic variants : HAPMAP202051
Genomic Variants (DGV)SPATA24 [DGVbeta]
DECIPHERSPATA24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA24 
Mutations
ICGC Data PortalSPATA24 
TCGA Data PortalSPATA24 
Broad Tumor PortalSPATA24
OASIS PortalSPATA24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA24
DgiDB (Drug Gene Interaction Database)SPATA24
DoCM (Curated mutations)SPATA24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA24 (select a term)
intoGenSPATA24
Cancer3DSPATA24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA24
Genetic Testing Registry SPATA24
NextProtQ86W54 [Medical]
TSGene202051
GENETestsSPATA24
Target ValidationSPATA24
Huge Navigator SPATA24 [HugePedia]
snp3D : Map Gene to Disease202051
BioCentury BCIQSPATA24
ClinGenSPATA24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202051
Chemical/Pharm GKB GenePA165660551
Clinical trialSPATA24
Miscellaneous
canSAR (ICR)SPATA24 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA24
EVEXSPATA24
GoPubMedSPATA24
iHOPSPATA24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.