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SPATA24 (spermatogenesis associated 24)

Identity

Alias (NCBI)CCDC161
T6441
HGNC (Hugo) SPATA24
HGNC Alias symbT6441
CCDC161
HGNC Alias namecoiled-coil domain containing 161
LocusID (NCBI) 202051
Atlas_Id 74120
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139396767 and ends at 139404087 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA24   27322
Cards
Entrez_Gene (NCBI)SPATA24    spermatogenesis associated 24
AliasesCCDC161; T6441
GeneCards (Weizmann)SPATA24
Ensembl hg19 (Hinxton)ENSG00000170469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170469 [Gene_View]  ENSG00000170469 [Sequence]  chr5:139396767-139404087 [Contig_View]  SPATA24 [Vega]
ICGC DataPortalENSG00000170469
TCGA cBioPortalSPATA24
AceView (NCBI)SPATA24
Genatlas (Paris)SPATA24
SOURCE (Princeton)SPATA24
Genetics Home Reference (NIH)SPATA24
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA24  -     chr5:139396767-139404087 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA24  -     5q31.2   [Description]    (hg19-Feb_2009)
GoldenPathSPATA24 - 5q31.2 [CytoView hg19]  SPATA24 - 5q31.2 [CytoView hg38]
ImmunoBaseENSG00000170469
Genome Data Viewer NCBISPATA24 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA399058 AK098740 BC040037 BC050563 BM785501
RefSeq transcript (Entrez)NM_194296
Consensus coding sequences : CCDS (NCBI)SPATA24
Gene ExpressionSPATA24 [ NCBI-GEO ]   SPATA24 [ EBI - ARRAY_EXPRESS ]   SPATA24 [ SEEK ]   SPATA24 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA24 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA24 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202051
GTEX Portal (Tissue expression)SPATA24
Human Protein AtlasENSG00000170469-SPATA24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W54
PhosPhoSitePlusQ86W54
Domains : Interpro (EBI)SPATA24   
Domain families : Pfam (Sanger)SPATA24 (PF15175)   
Domain families : Pfam (NCBI)pfam15175   
Conserved Domain (NCBI)SPATA24
SuperfamilyQ86W54
AlphaFold pdb e-kbQ86W54   
Human Protein Atlas [tissue]ENSG00000170469-SPATA24 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q86W54
IntAct (EBI)Q86W54
BioGRIDSPATA24
STRING (EMBL)SPATA24
ZODIACSPATA24
Ontologies - Pathways
QuickGOQ86W54
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkSPATA24
Atlas of Cancer Signalling NetworkSPATA24
Wikipedia pathwaysSPATA24
Orthology - Evolution
OrthoDB202051
GeneTree (enSembl)ENSG00000170469
Phylogenetic Trees/Animal Genes : TreeFamSPATA24
Homologs : HomoloGeneSPATA24
Homology/Alignments : Family Browser (UCSC)SPATA24
Gene fusions - Rearrangements
Fusion : QuiverSPATA24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA24
dbVarSPATA24
ClinVarSPATA24
MonarchSPATA24
1000_GenomesSPATA24 
Exome Variant ServerSPATA24
GNOMAD BrowserENSG00000170469
Varsome BrowserSPATA24
ACMGSPATA24 variants
VarityQ86W54
Genomic Variants (DGV)SPATA24 [DGVbeta]
DECIPHERSPATA24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA24 
Mutations
ICGC Data PortalSPATA24 
TCGA Data PortalSPATA24 
Broad Tumor PortalSPATA24
OASIS PortalSPATA24 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA24
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA24
DgiDB (Drug Gene Interaction Database)SPATA24
DoCM (Curated mutations)SPATA24
CIViC (Clinical Interpretations of Variants in Cancer)SPATA24
Cancer3DSPATA24
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA24
MedgenSPATA24
Genetic Testing Registry SPATA24
NextProtQ86W54 [Medical]
GENETestsSPATA24
Target ValidationSPATA24
Huge Navigator SPATA24 [HugePedia]
ClinGenSPATA24
Clinical trials, drugs, therapy
MyCancerGenomeSPATA24
Protein Interactions : CTDSPATA24
Pharm GKB GenePA165660551
PharosQ86W54
Clinical trialSPATA24
Miscellaneous
canSAR (ICR)SPATA24
HarmonizomeSPATA24
DataMed IndexSPATA24
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:23:49 CEST 2021

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