Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPATA25 (spermatogenesis associated 25)

Identity

Alias (NCBI)C20orf165
TSG23
dJ337O18.8
HGNC (Hugo) SPATA25
HGNC Alias symbdJ337O18.8
TSG23
HGNC Previous nameC20orf165
HGNC Previous namechromosome 20 open reading frame 165
LocusID (NCBI) 128497
Atlas_Id 74121
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45886491 and ends at 45887622 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA25   16158
Cards
Entrez_Gene (NCBI)SPATA25    spermatogenesis associated 25
AliasesC20orf165; TSG23; dJ337O18.8
GeneCards (Weizmann)SPATA25
Ensembl hg19 (Hinxton)ENSG00000149634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149634 [Gene_View]  ENSG00000149634 [Sequence]  chr20:45886491-45887622 [Contig_View]  SPATA25 [Vega]
ICGC DataPortalENSG00000149634
TCGA cBioPortalSPATA25
AceView (NCBI)SPATA25
Genatlas (Paris)SPATA25
SOURCE (Princeton)SPATA25
Genetics Home Reference (NIH)SPATA25
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA25  -     chr20:45886491-45887622 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA25  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathSPATA25 - 20q13.12 [CytoView hg19]  SPATA25 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000149634
Genome Data Viewer NCBISPATA25 [Mapview hg19]  
OMIM618936   
Gene and transcription
Genbank (Entrez)BC039607
RefSeq transcript (Entrez)NM_080608
Consensus coding sequences : CCDS (NCBI)SPATA25
Gene ExpressionSPATA25 [ NCBI-GEO ]   SPATA25 [ EBI - ARRAY_EXPRESS ]   SPATA25 [ SEEK ]   SPATA25 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA25 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA25 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128497
GTEX Portal (Tissue expression)SPATA25
Human Protein AtlasENSG00000149634-SPATA25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR10
PhosPhoSitePlusQ9BR10
Domains : Interpro (EBI)SPATA25   
Domain families : Pfam (Sanger)SPATA25 (PF15218)   
Domain families : Pfam (NCBI)pfam15218   
Conserved Domain (NCBI)SPATA25
SuperfamilyQ9BR10
AlphaFold pdb e-kbQ9BR10   
Human Protein Atlas [tissue]ENSG00000149634-SPATA25 [tissue]
HPRD12754
Protein Interaction databases
DIP (DOE-UCLA)Q9BR10
IntAct (EBI)Q9BR10
BioGRIDSPATA25
STRING (EMBL)SPATA25
ZODIACSPATA25
Ontologies - Pathways
QuickGOQ9BR10
Ontology : AmiGOmolecular_function  protein binding  cellular_component  spermatogenesis  spermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  spermatogenesis  spermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA25
Atlas of Cancer Signalling NetworkSPATA25
Wikipedia pathwaysSPATA25
Orthology - Evolution
OrthoDB128497
GeneTree (enSembl)ENSG00000149634
Phylogenetic Trees/Animal Genes : TreeFamSPATA25
Homologs : HomoloGeneSPATA25
Homology/Alignments : Family Browser (UCSC)SPATA25
Gene fusions - Rearrangements
Fusion : QuiverSPATA25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA25
dbVarSPATA25
ClinVarSPATA25
MonarchSPATA25
1000_GenomesSPATA25 
Exome Variant ServerSPATA25
GNOMAD BrowserENSG00000149634
Varsome BrowserSPATA25
ACMGSPATA25 variants
VarityQ9BR10
Genomic Variants (DGV)SPATA25 [DGVbeta]
DECIPHERSPATA25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA25 
Mutations
ICGC Data PortalSPATA25 
TCGA Data PortalSPATA25 
Broad Tumor PortalSPATA25
OASIS PortalSPATA25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA25  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATA25
Mutations and Diseases : HGMDSPATA25
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA25
DgiDB (Drug Gene Interaction Database)SPATA25
DoCM (Curated mutations)SPATA25
CIViC (Clinical Interpretations of Variants in Cancer)SPATA25
Cancer3DSPATA25
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618936   
Orphanet
DisGeNETSPATA25
MedgenSPATA25
Genetic Testing Registry SPATA25
NextProtQ9BR10 [Medical]
GENETestsSPATA25
Target ValidationSPATA25
Huge Navigator SPATA25 [HugePedia]
ClinGenSPATA25
Clinical trials, drugs, therapy
MyCancerGenomeSPATA25
Protein Interactions : CTDSPATA25
Pharm GKB GenePA25707
PharosQ9BR10
Clinical trialSPATA25
Miscellaneous
canSAR (ICR)SPATA25
HarmonizomeSPATA25
DataMed IndexSPATA25
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:23:49 CEST 2021

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