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SPATA25 (spermatogenesis associated 25)

Identity

Alias_namesC20orf165
chromosome 20 open reading frame 165
Alias_symbol (synonym)dJ337O18.8
TSG23
Other alias
HGNC (Hugo) SPATA25
LocusID (NCBI) 128497
Atlas_Id 74121
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45886491 and ends at 45887599 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA25   16158
Cards
Entrez_Gene (NCBI)SPATA25  128497  spermatogenesis associated 25
AliasesC20orf165; TSG23; dJ337O18.8
GeneCards (Weizmann)SPATA25
Ensembl hg19 (Hinxton)ENSG00000149634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149634 [Gene_View]  chr20:45886491-45887599 [Contig_View]  SPATA25 [Vega]
ICGC DataPortalENSG00000149634
TCGA cBioPortalSPATA25
AceView (NCBI)SPATA25
Genatlas (Paris)SPATA25
WikiGenes128497
SOURCE (Princeton)SPATA25
Genetics Home Reference (NIH)SPATA25
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA25  -     chr20:45886491-45887599 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA25  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSPATA25 - 20q13.12 [CytoView hg19]  SPATA25 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISPATA25 [Mapview hg19]  SPATA25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039607
RefSeq transcript (Entrez)NM_080608
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA25
Cluster EST : UnigeneHs.128235 [ NCBI ]
CGAP (NCI)Hs.128235
Alternative Splicing GalleryENSG00000149634
Gene ExpressionSPATA25 [ NCBI-GEO ]   SPATA25 [ EBI - ARRAY_EXPRESS ]   SPATA25 [ SEEK ]   SPATA25 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128497
GTEX Portal (Tissue expression)SPATA25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR10
Splice isoforms : SwissVarQ9BR10
PhosPhoSitePlusQ9BR10
Domains : Interpro (EBI)SPATA25   
Domain families : Pfam (Sanger)SPATA25 (PF15218)   
Domain families : Pfam (NCBI)pfam15218   
Domain structure : Prodom (Prabi Lyon)PD400642 (PD400642)   
Conserved Domain (NCBI)SPATA25
DMDM Disease mutations128497
Blocks (Seattle)SPATA25
SuperfamilyQ9BR10
Human Protein AtlasENSG00000149634
Peptide AtlasQ9BR10
HPRD12754
IPIIPI00028648   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR10
IntAct (EBI)Q9BR10
FunCoupENSG00000149634
BioGRIDSPATA25
STRING (EMBL)SPATA25
ZODIACSPATA25
Ontologies - Pathways
QuickGOQ9BR10
Ontology : AmiGOmolecular_function  cellular_component  spermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBImolecular_function  cellular_component  spermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA25
Atlas of Cancer Signalling NetworkSPATA25
Wikipedia pathwaysSPATA25
Orthology - Evolution
OrthoDB128497
GeneTree (enSembl)ENSG00000149634
Phylogenetic Trees/Animal Genes : TreeFamSPATA25
HOVERGENQ9BR10
HOGENOMQ9BR10
Homologs : HomoloGeneSPATA25
Homology/Alignments : Family Browser (UCSC)SPATA25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA25
dbVarSPATA25
ClinVarSPATA25
1000_GenomesSPATA25 
Exome Variant ServerSPATA25
ExAC (Exome Aggregation Consortium)SPATA25 (select the gene name)
Genetic variants : HAPMAP128497
Genomic Variants (DGV)SPATA25 [DGVbeta]
DECIPHERSPATA25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA25 
Mutations
ICGC Data PortalSPATA25 
TCGA Data PortalSPATA25 
Broad Tumor PortalSPATA25
OASIS PortalSPATA25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA25
DgiDB (Drug Gene Interaction Database)SPATA25
DoCM (Curated mutations)SPATA25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA25 (select a term)
intoGenSPATA25
Cancer3DSPATA25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA25
Genetic Testing Registry SPATA25
NextProtQ9BR10 [Medical]
TSGene128497
GENETestsSPATA25
Target ValidationSPATA25
Huge Navigator SPATA25 [HugePedia]
snp3D : Map Gene to Disease128497
BioCentury BCIQSPATA25
ClinGenSPATA25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128497
Chemical/Pharm GKB GenePA25707
Clinical trialSPATA25
Miscellaneous
canSAR (ICR)SPATA25 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA25
EVEXSPATA25
GoPubMedSPATA25
iHOPSPATA25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:13 CEST 2017

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