Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SPATA2L (spermatogenesis associated 2 like)

Identity

Alias (NCBI)C16orf76
tamo
HGNC (Hugo) SPATA2L
HGNC Alias symbMGC26885
tamo
HGNC Previous nameC16orf76
HGNC Previous namechromosome 16 open reading frame 76
LocusID (NCBI) 124044
Atlas_Id 74122
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89696357 and ends at 89701713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPATA2L   28393
Cards
Entrez_Gene (NCBI)SPATA2L    spermatogenesis associated 2 like
AliasesC16orf76; tamo
GeneCards (Weizmann)SPATA2L
Ensembl hg19 (Hinxton)ENSG00000158792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158792 [Gene_View]  ENSG00000158792 [Sequence]  chr16:89696357-89701713 [Contig_View]  SPATA2L [Vega]
ICGC DataPortalENSG00000158792
TCGA cBioPortalSPATA2L
AceView (NCBI)SPATA2L
Genatlas (Paris)SPATA2L
SOURCE (Princeton)SPATA2L
Genetics Home Reference (NIH)SPATA2L
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA2L  -     chr16:89696357-89701713 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA2L  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathSPATA2L - 16q24.3 [CytoView hg19]  SPATA2L - 16q24.3 [CytoView hg38]
ImmunoBaseENSG00000158792
genome Data Viewer NCBISPATA2L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF070574 AK127372 BC027606 BC039608 BC053588
RefSeq transcript (Entrez)NM_152339
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA2L
Alternative Splicing GalleryENSG00000158792
Gene ExpressionSPATA2L [ NCBI-GEO ]   SPATA2L [ EBI - ARRAY_EXPRESS ]   SPATA2L [ SEEK ]   SPATA2L [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA2L [ Firebrowse - Broad ]
GenevisibleExpression of SPATA2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124044
GTEX Portal (Tissue expression)SPATA2L
Human Protein AtlasENSG00000158792-SPATA2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUW3
Splice isoforms : SwissVarQ8IUW3
PhosPhoSitePlusQ8IUW3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA2L
Blocks (Seattle)SPATA2L
SuperfamilyQ8IUW3
Human Protein Atlas [tissue]ENSG00000158792-SPATA2L [tissue]
Peptide AtlasQ8IUW3
HPRD14515
IPIIPI00216887   IPI00335448   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUW3
IntAct (EBI)Q8IUW3
BioGRIDSPATA2L
STRING (EMBL)SPATA2L
ZODIACSPATA2L
Ontologies - Pathways
QuickGOQ8IUW3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATA2L
Atlas of Cancer Signalling NetworkSPATA2L
Wikipedia pathwaysSPATA2L
Orthology - Evolution
OrthoDB124044
GeneTree (enSembl)ENSG00000158792
Phylogenetic Trees/Animal Genes : TreeFamSPATA2L
HOGENOMQ8IUW3
Homologs : HomoloGeneSPATA2L
Homology/Alignments : Family Browser (UCSC)SPATA2L
Gene fusions - Rearrangements
Fusion : QuiverSPATA2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA2L [hg38]
dbVarSPATA2L
ClinVarSPATA2L
MonarchSPATA2L
1000_GenomesSPATA2L 
Exome Variant ServerSPATA2L
GNOMAD BrowserENSG00000158792
Varsome BrowserSPATA2L
Genomic Variants (DGV)SPATA2L [DGVbeta]
DECIPHERSPATA2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA2L 
Mutations
ICGC Data PortalSPATA2L 
TCGA Data PortalSPATA2L 
Broad Tumor PortalSPATA2L
OASIS PortalSPATA2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATA2L
Mutations and Diseases : HGMDSPATA2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA2L
DgiDB (Drug Gene Interaction Database)SPATA2L
DoCM (Curated mutations)SPATA2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA2L (select a term)
intoGenSPATA2L
Cancer3DSPATA2L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA2L
MedgenSPATA2L
Genetic Testing Registry SPATA2L
NextProtQ8IUW3 [Medical]
GENETestsSPATA2L
Target ValidationSPATA2L
Huge Navigator SPATA2L [HugePedia]
ClinGenSPATA2L
Clinical trials, drugs, therapy
MyCancerGenomeSPATA2L
Protein Interactions : CTD
Pharm GKB GenePA162404411
Clinical trialSPATA2L
Miscellaneous
canSAR (ICR)SPATA2L (select the gene name)
HarmonizomeSPATA2L
DataMed IndexSPATA2L
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA2L
EVEXSPATA2L
GoPubMedSPATA2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:30:03 CET 2020
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