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SPATA2L (spermatogenesis associated 2-like)

Identity

Alias_namesC16orf76
chromosome 16 open reading frame 76
Alias_symbol (synonym)MGC26885
tamo
Other alias
HGNC (Hugo) SPATA2L
LocusID (NCBI) 124044
Atlas_Id 74122
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89762765 and ends at 89768121 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA2L   28393
Cards
Entrez_Gene (NCBI)SPATA2L  124044  spermatogenesis associated 2-like
AliasesC16orf76; tamo
GeneCards (Weizmann)SPATA2L
Ensembl hg19 (Hinxton)ENSG00000158792 [Gene_View]  chr16:89762765-89768121 [Contig_View]  SPATA2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000158792 [Gene_View]  chr16:89762765-89768121 [Contig_View]  SPATA2L [Vega]
ICGC DataPortalENSG00000158792
TCGA cBioPortalSPATA2L
AceView (NCBI)SPATA2L
Genatlas (Paris)SPATA2L
WikiGenes124044
SOURCE (Princeton)SPATA2L
Genetics Home Reference (NIH)SPATA2L
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA2L  -     chr16:89762765-89768121 -  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA2L  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblSPATA2L - 16q24.3 [CytoView hg19]  SPATA2L - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBISPATA2L [Mapview hg19]  SPATA2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070574 AK127372 BC027606 BC039608 BC053588
RefSeq transcript (Entrez)NM_152339
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)SPATA2L
Cluster EST : UnigeneHs.374556 [ NCBI ]
CGAP (NCI)Hs.374556
Alternative Splicing GalleryENSG00000158792
Gene ExpressionSPATA2L [ NCBI-GEO ]   SPATA2L [ EBI - ARRAY_EXPRESS ]   SPATA2L [ SEEK ]   SPATA2L [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124044
GTEX Portal (Tissue expression)SPATA2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUW3
Splice isoforms : SwissVarQ8IUW3
PhosPhoSitePlusQ8IUW3
Domains : Interpro (EBI)SPATA2L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA2L
DMDM Disease mutations124044
Blocks (Seattle)SPATA2L
SuperfamilyQ8IUW3
Human Protein AtlasENSG00000158792
Peptide AtlasQ8IUW3
HPRD14515
IPIIPI00216887   IPI00335448   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUW3
IntAct (EBI)Q8IUW3
FunCoupENSG00000158792
BioGRIDSPATA2L
STRING (EMBL)SPATA2L
ZODIACSPATA2L
Ontologies - Pathways
QuickGOQ8IUW3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATA2L
Atlas of Cancer Signalling NetworkSPATA2L
Wikipedia pathwaysSPATA2L
Orthology - Evolution
OrthoDB124044
GeneTree (enSembl)ENSG00000158792
Phylogenetic Trees/Animal Genes : TreeFamSPATA2L
HOVERGENQ8IUW3
HOGENOMQ8IUW3
Homologs : HomoloGeneSPATA2L
Homology/Alignments : Family Browser (UCSC)SPATA2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA2L
dbVarSPATA2L
ClinVarSPATA2L
1000_GenomesSPATA2L 
Exome Variant ServerSPATA2L
ExAC (Exome Aggregation Consortium)SPATA2L (select the gene name)
Genetic variants : HAPMAP124044
Genomic Variants (DGV)SPATA2L [DGVbeta]
DECIPHER (Syndromes)16:89762765-89768121  ENSG00000158792
CONAN: Copy Number AnalysisSPATA2L 
Mutations
ICGC Data PortalSPATA2L 
TCGA Data PortalSPATA2L 
Broad Tumor PortalSPATA2L
OASIS PortalSPATA2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA2L
DgiDB (Drug Gene Interaction Database)SPATA2L
DoCM (Curated mutations)SPATA2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA2L (select a term)
intoGenSPATA2L
Cancer3DSPATA2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA2L
Genetic Testing Registry SPATA2L
NextProtQ8IUW3 [Medical]
TSGene124044
GENETestsSPATA2L
Huge Navigator SPATA2L [HugePedia]
snp3D : Map Gene to Disease124044
BioCentury BCIQSPATA2L
ClinGenSPATA2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124044
Chemical/Pharm GKB GenePA162404411
Clinical trialSPATA2L
Miscellaneous
canSAR (ICR)SPATA2L (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA2L
EVEXSPATA2L
GoPubMedSPATA2L
iHOPSPATA2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:19 CET 2017

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