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SPATA3 (spermatogenesis associated 3)

Identity

Alias_symbol (synonym)TSARG1
Other alias
HGNC (Hugo) SPATA3
LocusID (NCBI) 130560
Atlas_Id 74123
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 230996124 and ends at 231007284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RADIL (7p22.1) / SPATA3 (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA3   17884
Cards
Entrez_Gene (NCBI)SPATA3  130560  spermatogenesis associated 3
AliasesTSARG1
GeneCards (Weizmann)SPATA3
Ensembl hg19 (Hinxton)ENSG00000173699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173699 [Gene_View]  chr2:230996124-231007284 [Contig_View]  SPATA3 [Vega]
ICGC DataPortalENSG00000173699
TCGA cBioPortalSPATA3
AceView (NCBI)SPATA3
Genatlas (Paris)SPATA3
WikiGenes130560
SOURCE (Princeton)SPATA3
Genetics Home Reference (NIH)SPATA3
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA3  -     chr2:230996124-231007284 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA3  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblSPATA3 - 2q37.1 [CytoView hg19]  SPATA3 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBISPATA3 [Mapview hg19]  SPATA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093385 AK126086 AY032925 BC036248 BC047704
RefSeq transcript (Entrez)NM_139073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA3
Cluster EST : UnigeneHs.745178 [ NCBI ]
CGAP (NCI)Hs.745178
Alternative Splicing GalleryENSG00000173699
Gene ExpressionSPATA3 [ NCBI-GEO ]   SPATA3 [ EBI - ARRAY_EXPRESS ]   SPATA3 [ SEEK ]   SPATA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130560
GTEX Portal (Tissue expression)SPATA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHX4
Splice isoforms : SwissVarQ8NHX4
PhosPhoSitePlusQ8NHX4
Domains : Interpro (EBI)SPATA3   
Domain families : Pfam (Sanger)SPATA3 (PF15662)   
Domain families : Pfam (NCBI)pfam15662   
Conserved Domain (NCBI)SPATA3
DMDM Disease mutations130560
Blocks (Seattle)SPATA3
SuperfamilyQ8NHX4
Human Protein AtlasENSG00000173699
Peptide AtlasQ8NHX4
HPRD15428
IPIIPI00940002   IPI00480186   IPI00916197   IPI00915927   IPI00917754   IPI00982625   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHX4
IntAct (EBI)Q8NHX4
FunCoupENSG00000173699
BioGRIDSPATA3
STRING (EMBL)SPATA3
ZODIACSPATA3
Ontologies - Pathways
QuickGOQ8NHX4
Ontology : AmiGOmolecular_function  cellular_component  
Ontology : EGO-EBImolecular_function  cellular_component  
NDEx NetworkSPATA3
Atlas of Cancer Signalling NetworkSPATA3
Wikipedia pathwaysSPATA3
Orthology - Evolution
OrthoDB130560
GeneTree (enSembl)ENSG00000173699
Phylogenetic Trees/Animal Genes : TreeFamSPATA3
HOVERGENQ8NHX4
HOGENOMQ8NHX4
Homologs : HomoloGeneSPATA3
Homology/Alignments : Family Browser (UCSC)SPATA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA3
dbVarSPATA3
ClinVarSPATA3
1000_GenomesSPATA3 
Exome Variant ServerSPATA3
ExAC (Exome Aggregation Consortium)SPATA3 (select the gene name)
Genetic variants : HAPMAP130560
Genomic Variants (DGV)SPATA3 [DGVbeta]
DECIPHERSPATA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA3 
Mutations
ICGC Data PortalSPATA3 
TCGA Data PortalSPATA3 
Broad Tumor PortalSPATA3
OASIS PortalSPATA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA3
DgiDB (Drug Gene Interaction Database)SPATA3
DoCM (Curated mutations)SPATA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA3 (select a term)
intoGenSPATA3
Cancer3DSPATA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA3
Genetic Testing Registry SPATA3
NextProtQ8NHX4 [Medical]
TSGene130560
GENETestsSPATA3
Target ValidationSPATA3
Huge Navigator SPATA3 [HugePedia]
snp3D : Map Gene to Disease130560
BioCentury BCIQSPATA3
ClinGenSPATA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130560
Chemical/Pharm GKB GenePA38256
Clinical trialSPATA3
Miscellaneous
canSAR (ICR)SPATA3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA3
EVEXSPATA3
GoPubMedSPATA3
iHOPSPATA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:47 CEST 2017

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