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SPATA31A1 (SPATA31 subfamily A member 1)

Identity

Alias_namesC9orf36
FAM75A1
SPATA31A2
FAM75A2
chromosome 9 open reading frame 36
family with sequence similarity 75, member A1
SPATA31 subfamily A, member 2
family with sequence similarity 75, member A2
Alias_symbol (synonym)DKFZP434B204
C9orf36A
Other alias
HGNC (Hugo) SPATA31A1
LocusID (NCBI) 647060
Atlas_Id 74124
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 39355669 and ends at 39361962 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31A1   23394
Cards
Entrez_Gene (NCBI)SPATA31A1  647060  SPATA31 subfamily A member 1
AliasesC9orf36; C9orf36A; FAM75A1; FAM75A2; 
SPATA31A2
GeneCards (Weizmann)SPATA31A1
Ensembl hg19 (Hinxton)ENSG00000204849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204849 [Gene_View]  chr9:39355669-39361962 [Contig_View]  SPATA31A1 [Vega]
ICGC DataPortalENSG00000204849
TCGA cBioPortalSPATA31A1
AceView (NCBI)SPATA31A1
Genatlas (Paris)SPATA31A1
WikiGenes647060
SOURCE (Princeton)SPATA31A1
Genetics Home Reference (NIH)SPATA31A1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A1  -     chr9:39355669-39361962 +  9p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A1  -     9p12   [Description]    (hg19-Feb_2009)
EnsemblSPATA31A1 - 9p12 [CytoView hg19]  SPATA31A1 - 9p12 [CytoView hg38]
Mapping of homologs : NCBISPATA31A1 [Mapview hg19]  SPATA31A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302569 BC146855
RefSeq transcript (Entrez)NM_001040065 NM_001085452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31A1
Cluster EST : UnigeneHs.575677 [ NCBI ]
CGAP (NCI)Hs.575677
Alternative Splicing GalleryENSG00000204849
Gene ExpressionSPATA31A1 [ NCBI-GEO ]   SPATA31A1 [ EBI - ARRAY_EXPRESS ]   SPATA31A1 [ SEEK ]   SPATA31A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647060
GTEX Portal (Tissue expression)SPATA31A1
Human Protein AtlasENSG00000204849-SPATA31A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TZJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TZJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TZJ5
Splice isoforms : SwissVarQ5TZJ5
PhosPhoSitePlusQ5TZJ5
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31A1
DMDM Disease mutations647060
Blocks (Seattle)SPATA31A1
SuperfamilyQ5TZJ5
Human Protein Atlas [tissue]ENSG00000204849-SPATA31A1 [tissue]
Peptide AtlasQ5TZJ5
IPIIPI00845457   
Protein Interaction databases
DIP (DOE-UCLA)Q5TZJ5
IntAct (EBI)Q5TZJ5
FunCoupENSG00000204849
BioGRIDSPATA31A1
STRING (EMBL)SPATA31A1
ZODIACSPATA31A1
Ontologies - Pathways
QuickGOQ5TZJ5
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A1
Atlas of Cancer Signalling NetworkSPATA31A1
Wikipedia pathwaysSPATA31A1
Orthology - Evolution
OrthoDB647060
GeneTree (enSembl)ENSG00000204849
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A1
HOVERGENQ5TZJ5
HOGENOMQ5TZJ5
Homologs : HomoloGeneSPATA31A1
Homology/Alignments : Family Browser (UCSC)SPATA31A1
Gene fusions - Rearrangements
Tumor Fusion PortalSPATA31A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A1
dbVarSPATA31A1
ClinVarSPATA31A1
1000_GenomesSPATA31A1 
Exome Variant ServerSPATA31A1
ExAC (Exome Aggregation Consortium)ENSG00000204849
GNOMAD BrowserENSG00000204849
Genetic variants : HAPMAP647060
Genomic Variants (DGV)SPATA31A1 [DGVbeta]
DECIPHERSPATA31A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A1 
Mutations
ICGC Data PortalSPATA31A1 
TCGA Data PortalSPATA31A1 
Broad Tumor PortalSPATA31A1
OASIS PortalSPATA31A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31A1
DgiDB (Drug Gene Interaction Database)SPATA31A1
DoCM (Curated mutations)SPATA31A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A1 (select a term)
intoGenSPATA31A1
Cancer3DSPATA31A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA31A1
MedgenSPATA31A1
Genetic Testing Registry SPATA31A1
NextProtQ5TZJ5 [Medical]
TSGene647060
GENETestsSPATA31A1
Target ValidationSPATA31A1
Huge Navigator SPATA31A1 [HugePedia]
snp3D : Map Gene to Disease647060
BioCentury BCIQSPATA31A1
ClinGenSPATA31A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647060
Chemical/Pharm GKB GenePA162387841
Clinical trialSPATA31A1
Miscellaneous
canSAR (ICR)SPATA31A1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31A1
EVEXSPATA31A1
GoPubMedSPATA31A1
iHOPSPATA31A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:45 CET 2017

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