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SPATA31A3 (SPATA31 subfamily A member 3)

Identity

Alias_namesFAM75A3
family with sequence similarity 75, member A3
Alias_symbol (synonym)OTTHUMG00000013164
DKFZp434B204
Other alias
HGNC (Hugo) SPATA31A3
LocusID (NCBI) 727830
Atlas_Id 74125
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 66986304 and ends at 66992550 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31A3   32003
Cards
Entrez_Gene (NCBI)SPATA31A3  727830  SPATA31 subfamily A member 3
AliasesFAM75A3
GeneCards (Weizmann)SPATA31A3
Ensembl hg19 (Hinxton)ENSG00000275969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275969 [Gene_View]  chr9:66986304-66992550 [Contig_View]  SPATA31A3 [Vega]
ICGC DataPortalENSG00000275969
TCGA cBioPortalSPATA31A3
AceView (NCBI)SPATA31A3
Genatlas (Paris)SPATA31A3
WikiGenes727830
SOURCE (Princeton)SPATA31A3
Genetics Home Reference (NIH)SPATA31A3
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A3  -     chr9:66986304-66992550 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A3  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblSPATA31A3 - 9q21.11 [CytoView hg19]  SPATA31A3 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBISPATA31A3 [Mapview hg19]  SPATA31A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL080148
RefSeq transcript (Entrez)NM_001083124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31A3
Cluster EST : UnigeneHs.632078 [ NCBI ]
CGAP (NCI)Hs.632078
Alternative Splicing GalleryENSG00000275969
Gene ExpressionSPATA31A3 [ NCBI-GEO ]   SPATA31A3 [ EBI - ARRAY_EXPRESS ]   SPATA31A3 [ SEEK ]   SPATA31A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727830
GTEX Portal (Tissue expression)SPATA31A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYP0
Splice isoforms : SwissVarQ5VYP0
PhosPhoSitePlusQ5VYP0
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31A3
DMDM Disease mutations727830
Blocks (Seattle)SPATA31A3
SuperfamilyQ5VYP0
Human Protein AtlasENSG00000275969
Peptide AtlasQ5VYP0
IPIIPI00472874   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYP0
IntAct (EBI)Q5VYP0
FunCoupENSG00000275969
BioGRIDSPATA31A3
STRING (EMBL)SPATA31A3
ZODIACSPATA31A3
Ontologies - Pathways
QuickGOQ5VYP0
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A3
Atlas of Cancer Signalling NetworkSPATA31A3
Wikipedia pathwaysSPATA31A3
Orthology - Evolution
OrthoDB727830
GeneTree (enSembl)ENSG00000275969
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A3
HOVERGENQ5VYP0
HOGENOMQ5VYP0
Homologs : HomoloGeneSPATA31A3
Homology/Alignments : Family Browser (UCSC)SPATA31A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A3
dbVarSPATA31A3
ClinVarSPATA31A3
1000_GenomesSPATA31A3 
Exome Variant ServerSPATA31A3
ExAC (Exome Aggregation Consortium)SPATA31A3 (select the gene name)
Genetic variants : HAPMAP727830
Genomic Variants (DGV)SPATA31A3 [DGVbeta]
DECIPHERSPATA31A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A3 
Mutations
ICGC Data PortalSPATA31A3 
TCGA Data PortalSPATA31A3 
Broad Tumor PortalSPATA31A3
OASIS PortalSPATA31A3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31A3
DgiDB (Drug Gene Interaction Database)SPATA31A3
DoCM (Curated mutations)SPATA31A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A3 (select a term)
intoGenSPATA31A3
Cancer3DSPATA31A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31A3
Genetic Testing Registry SPATA31A3
NextProtQ5VYP0 [Medical]
TSGene727830
GENETestsSPATA31A3
Target ValidationSPATA31A3
Huge Navigator SPATA31A3 [HugePedia]
snp3D : Map Gene to Disease727830
BioCentury BCIQSPATA31A3
ClinGenSPATA31A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727830
Chemical/Pharm GKB GenePA162387867
Clinical trialSPATA31A3
Miscellaneous
canSAR (ICR)SPATA31A3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31A3
EVEXSPATA31A3
GoPubMedSPATA31A3
iHOPSPATA31A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:48 CEST 2017

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