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SPATA31A5 (SPATA31 subfamily A member 5)

Identity

Alias (NCBI)FAM75A5
HGNC (Hugo) SPATA31A5
HGNC Alias symbOTTHUMG00000013204
HGNC Previous nameFAM75A5
HGNC Previous namefamily with sequence similarity 75, member A5
LocusID (NCBI) 727905
Atlas_Id 74126
Location 9q12  [Link to chromosome band 9q12]
Location_base_pair Starts at 60914208 and ends at 60920653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA31A5   32005
Cards
Entrez_Gene (NCBI)SPATA31A5    SPATA31 subfamily A member 5
AliasesFAM75A5
GeneCards (Weizmann)SPATA31A5
Ensembl hg19 (Hinxton)ENSG00000276581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276581 [Gene_View]  ENSG00000276581 [Sequence]  chr9:60914208-60920653 [Contig_View]  SPATA31A5 [Vega]
ICGC DataPortalENSG00000276581
TCGA cBioPortalSPATA31A5
AceView (NCBI)SPATA31A5
Genatlas (Paris)SPATA31A5
SOURCE (Princeton)SPATA31A5
Genetics Home Reference (NIH)SPATA31A5
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A5  -     chr9:60914208-60920653 +  9q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A5  -     9q12   [Description]    (hg19-Feb_2009)
GoldenPathSPATA31A5 - 9q12 [CytoView hg19]  SPATA31A5 - 9q12 [CytoView hg38]
ImmunoBaseENSG00000276581
Genome Data Viewer NCBISPATA31A5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001113541
Consensus coding sequences : CCDS (NCBI)SPATA31A5
Gene ExpressionSPATA31A5 [ NCBI-GEO ]   SPATA31A5 [ EBI - ARRAY_EXPRESS ]   SPATA31A5 [ SEEK ]   SPATA31A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A5 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA31A5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727905
GTEX Portal (Tissue expression)SPATA31A5
Human Protein AtlasENSG00000276581-SPATA31A5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU36
PhosPhoSitePlusQ5VU36
Domains : Interpro (EBI)DUF4599    SPATA31/FAM205   
Domain families : Pfam (Sanger)DUF4599 (PF15371)    FAM75 (PF14650)   
Domain families : Pfam (NCBI)pfam15371    pfam14650   
Conserved Domain (NCBI)SPATA31A5
SuperfamilyQ5VU36
AlphaFold pdb e-kbQ5VU36   
Human Protein Atlas [tissue]ENSG00000276581-SPATA31A5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VU36
IntAct (EBI)Q5VU36
BioGRIDSPATA31A5
STRING (EMBL)SPATA31A5
ZODIACSPATA31A5
Ontologies - Pathways
QuickGOQ5VU36
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A5
Atlas of Cancer Signalling NetworkSPATA31A5
Wikipedia pathwaysSPATA31A5
Orthology - Evolution
OrthoDB727905
GeneTree (enSembl)ENSG00000276581
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A5
Homologs : HomoloGeneSPATA31A5
Homology/Alignments : Family Browser (UCSC)SPATA31A5
Gene fusions - Rearrangements
Fusion : QuiverSPATA31A5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A5
dbVarSPATA31A5
ClinVarSPATA31A5
MonarchSPATA31A5
1000_GenomesSPATA31A5 
Exome Variant ServerSPATA31A5
GNOMAD BrowserENSG00000276581
Varsome BrowserSPATA31A5
ACMGSPATA31A5 variants
VarityQ5VU36
Genomic Variants (DGV)SPATA31A5 [DGVbeta]
DECIPHERSPATA31A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A5 
Mutations
ICGC Data PortalSPATA31A5 
TCGA Data PortalSPATA31A5 
Broad Tumor PortalSPATA31A5
OASIS PortalSPATA31A5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA31A5
DgiDB (Drug Gene Interaction Database)SPATA31A5
DoCM (Curated mutations)SPATA31A5
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A5
Cancer3DSPATA31A5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA31A5
MedgenSPATA31A5
Genetic Testing Registry SPATA31A5
NextProtQ5VU36 [Medical]
GENETestsSPATA31A5
Target ValidationSPATA31A5
Huge Navigator SPATA31A5 [HugePedia]
ClinGenSPATA31A5
Clinical trials, drugs, therapy
MyCancerGenomeSPATA31A5
Protein Interactions : CTDSPATA31A5
Pharm GKB GenePA162387890
PharosQ5VU36
Clinical trialSPATA31A5
Miscellaneous
canSAR (ICR)SPATA31A5
HarmonizomeSPATA31A5
ARCHS4SPATA31A5
DataMed IndexSPATA31A5
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA31A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:53:41 CET 2022

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