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SPATA31A5 (SPATA31 subfamily A member 5)

Identity

Alias_namesFAM75A5
family with sequence similarity 75, member A5
Alias_symbol (synonym)OTTHUMG00000013204
Other alias
HGNC (Hugo) SPATA31A5
LocusID (NCBI) 727905
Atlas_Id 74126
Location 9q12  [Link to chromosome band 9q12]
Location_base_pair Starts at 60914407 and ends at 60920653 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31A5   32005
Cards
Entrez_Gene (NCBI)SPATA31A5  727905  SPATA31 subfamily A member 5
AliasesFAM75A5
GeneCards (Weizmann)SPATA31A5
Ensembl hg19 (Hinxton)ENSG00000276581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276581 [Gene_View]  chr9:60914407-60920653 [Contig_View]  SPATA31A5 [Vega]
ICGC DataPortalENSG00000276581
TCGA cBioPortalSPATA31A5
AceView (NCBI)SPATA31A5
Genatlas (Paris)SPATA31A5
WikiGenes727905
SOURCE (Princeton)SPATA31A5
Genetics Home Reference (NIH)SPATA31A5
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A5  -     chr9:60914407-60920653 +  9q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A5  -     9q12   [Description]    (hg19-Feb_2009)
EnsemblSPATA31A5 - 9q12 [CytoView hg19]  SPATA31A5 - 9q12 [CytoView hg38]
Mapping of homologs : NCBISPATA31A5 [Mapview hg19]  SPATA31A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001113541
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31A5
Cluster EST : UnigeneHs.645497 [ NCBI ]
CGAP (NCI)Hs.645497
Alternative Splicing GalleryENSG00000276581
Gene ExpressionSPATA31A5 [ NCBI-GEO ]   SPATA31A5 [ EBI - ARRAY_EXPRESS ]   SPATA31A5 [ SEEK ]   SPATA31A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727905
GTEX Portal (Tissue expression)SPATA31A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU36
Splice isoforms : SwissVarQ5VU36
PhosPhoSitePlusQ5VU36
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31A5
DMDM Disease mutations727905
Blocks (Seattle)SPATA31A5
SuperfamilyQ5VU36
Human Protein AtlasENSG00000276581
Peptide AtlasQ5VU36
IPIIPI00480163   
Protein Interaction databases
DIP (DOE-UCLA)Q5VU36
IntAct (EBI)Q5VU36
FunCoupENSG00000276581
BioGRIDSPATA31A5
STRING (EMBL)SPATA31A5
ZODIACSPATA31A5
Ontologies - Pathways
QuickGOQ5VU36
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A5
Atlas of Cancer Signalling NetworkSPATA31A5
Wikipedia pathwaysSPATA31A5
Orthology - Evolution
OrthoDB727905
GeneTree (enSembl)ENSG00000276581
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A5
HOVERGENQ5VU36
HOGENOMQ5VU36
Homologs : HomoloGeneSPATA31A5
Homology/Alignments : Family Browser (UCSC)SPATA31A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A5
dbVarSPATA31A5
ClinVarSPATA31A5
1000_GenomesSPATA31A5 
Exome Variant ServerSPATA31A5
ExAC (Exome Aggregation Consortium)SPATA31A5 (select the gene name)
Genetic variants : HAPMAP727905
Genomic Variants (DGV)SPATA31A5 [DGVbeta]
DECIPHERSPATA31A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A5 
Mutations
ICGC Data PortalSPATA31A5 
TCGA Data PortalSPATA31A5 
Broad Tumor PortalSPATA31A5
OASIS PortalSPATA31A5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31A5
DgiDB (Drug Gene Interaction Database)SPATA31A5
DoCM (Curated mutations)SPATA31A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A5 (select a term)
intoGenSPATA31A5
Cancer3DSPATA31A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31A5
Genetic Testing Registry SPATA31A5
NextProtQ5VU36 [Medical]
TSGene727905
GENETestsSPATA31A5
Target ValidationSPATA31A5
Huge Navigator SPATA31A5 [HugePedia]
snp3D : Map Gene to Disease727905
BioCentury BCIQSPATA31A5
ClinGenSPATA31A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727905
Chemical/Pharm GKB GenePA162387890
Clinical trialSPATA31A5
Miscellaneous
canSAR (ICR)SPATA31A5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31A5
EVEXSPATA31A5
GoPubMedSPATA31A5
iHOPSPATA31A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:13 CEST 2017

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