Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA31A6 (SPATA31 subfamily A member 6)

Identity

Alias_namesFAM75A6
family with sequence similarity 75, member A6
Alias_symbol (synonym)OTTHUMG00000013224
Other alias
HGNC (Hugo) SPATA31A6
LocusID (NCBI) 389730
Atlas_Id 74127
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 42183659 and ends at 42189887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31A6   32006
Cards
Entrez_Gene (NCBI)SPATA31A6  389730  SPATA31 subfamily A member 6
AliasesFAM75A6
GeneCards (Weizmann)SPATA31A6
Ensembl hg19 (Hinxton)ENSG00000185775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185775 [Gene_View]  chr9:42183659-42189887 [Contig_View]  SPATA31A6 [Vega]
ICGC DataPortalENSG00000185775
TCGA cBioPortalSPATA31A6
AceView (NCBI)SPATA31A6
Genatlas (Paris)SPATA31A6
WikiGenes389730
SOURCE (Princeton)SPATA31A6
Genetics Home Reference (NIH)SPATA31A6
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A6  -     chr9:42183659-42189887 +  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A6  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblSPATA31A6 - 9p11.2 [CytoView hg19]  SPATA31A6 - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBISPATA31A6 [Mapview hg19]  SPATA31A6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31A6
Cluster EST : UnigeneHs.455299 [ NCBI ]
CGAP (NCI)Hs.455299
Alternative Splicing GalleryENSG00000185775
Gene ExpressionSPATA31A6 [ NCBI-GEO ]   SPATA31A6 [ EBI - ARRAY_EXPRESS ]   SPATA31A6 [ SEEK ]   SPATA31A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389730
GTEX Portal (Tissue expression)SPATA31A6
Human Protein AtlasENSG00000185775-SPATA31A6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VVP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VVP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VVP1
Splice isoforms : SwissVarQ5VVP1
PhosPhoSitePlusQ5VVP1
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31A6
DMDM Disease mutations389730
Blocks (Seattle)SPATA31A6
SuperfamilyQ5VVP1
Human Protein Atlas [tissue]ENSG00000185775-SPATA31A6 [tissue]
Peptide AtlasQ5VVP1
IPIIPI00374520   
Protein Interaction databases
DIP (DOE-UCLA)Q5VVP1
IntAct (EBI)Q5VVP1
FunCoupENSG00000185775
BioGRIDSPATA31A6
STRING (EMBL)SPATA31A6
ZODIACSPATA31A6
Ontologies - Pathways
QuickGOQ5VVP1
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A6
Atlas of Cancer Signalling NetworkSPATA31A6
Wikipedia pathwaysSPATA31A6
Orthology - Evolution
OrthoDB389730
GeneTree (enSembl)ENSG00000185775
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A6
HOVERGENQ5VVP1
HOGENOMQ5VVP1
Homologs : HomoloGeneSPATA31A6
Homology/Alignments : Family Browser (UCSC)SPATA31A6
Gene fusions - Rearrangements
Fusion: Tumor Portal SPATA31A6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A6
dbVarSPATA31A6
ClinVarSPATA31A6
1000_GenomesSPATA31A6 
Exome Variant ServerSPATA31A6
ExAC (Exome Aggregation Consortium)ENSG00000185775
GNOMAD BrowserENSG00000185775
Genetic variants : HAPMAP389730
Genomic Variants (DGV)SPATA31A6 [DGVbeta]
DECIPHERSPATA31A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A6 
Mutations
ICGC Data PortalSPATA31A6 
TCGA Data PortalSPATA31A6 
Broad Tumor PortalSPATA31A6
OASIS PortalSPATA31A6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31A6
DgiDB (Drug Gene Interaction Database)SPATA31A6
DoCM (Curated mutations)SPATA31A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A6 (select a term)
intoGenSPATA31A6
Cancer3DSPATA31A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31A6
Genetic Testing Registry SPATA31A6
NextProtQ5VVP1 [Medical]
TSGene389730
GENETestsSPATA31A6
Target ValidationSPATA31A6
Huge Navigator SPATA31A6 [HugePedia]
snp3D : Map Gene to Disease389730
BioCentury BCIQSPATA31A6
ClinGenSPATA31A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389730
Chemical/Pharm GKB GenePA164719932
Clinical trialSPATA31A6
Miscellaneous
canSAR (ICR)SPATA31A6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31A6
EVEXSPATA31A6
GoPubMedSPATA31A6
iHOPSPATA31A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.