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SPATA31A7 (SPATA31 subfamily A member 7)

Identity

Alias (NCBI)AEP1
C9orf36
C9orf36A
FAM75A4
FAM75A7
SPATA31A4
HGNC (Hugo) SPATA31A7
HGNC Previous nameFAM75A7
 SPATA31A4
 FAM75A4
HGNC Previous namefamily with sequence similarity 75, member A7
 SPATA31 subfamily A, member 4
 family with sequence similarity 75, member A4
LocusID (NCBI) 26165
Atlas_Id 74128
Location 9q12  [Link to chromosome band 9q12]
Location_base_pair Starts at 60914407 and ends at 60920650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA31A7   32007
Cards
Entrez_Gene (NCBI)SPATA31A7    SPATA31 subfamily A member 7
AliasesAEP1; C9orf36; C9orf36A; FAM75A4; 
FAM75A7; SPATA31A4
GeneCards (Weizmann)SPATA31A7
Ensembl hg19 (Hinxton)ENSG00000276040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276040 [Gene_View]  ENSG00000276040 [Sequence]  chr9:60914407-60920650 [Contig_View]  SPATA31A7 [Vega]
ICGC DataPortalENSG00000276040
TCGA cBioPortalSPATA31A7
AceView (NCBI)SPATA31A7
Genatlas (Paris)SPATA31A7
SOURCE (Princeton)SPATA31A7
Genetics Home Reference (NIH)SPATA31A7
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31A7  -     chr9:60914407-60920650 +  9q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31A7  -     9q12   [Description]    (hg19-Feb_2009)
GoldenPathSPATA31A7 - 9q12 [CytoView hg19]  SPATA31A7 - 9q12 [CytoView hg38]
ImmunoBaseENSG00000276040
Genome Data Viewer NCBISPATA31A7 [Mapview hg19]  
OMIM616584   
Gene and transcription
Genbank (Entrez)BC040528 DB081004 DB085566
RefSeq transcript (Entrez)NM_015667
Consensus coding sequences : CCDS (NCBI)SPATA31A7
Gene ExpressionSPATA31A7 [ NCBI-GEO ]   SPATA31A7 [ EBI - ARRAY_EXPRESS ]   SPATA31A7 [ SEEK ]   SPATA31A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A7 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA31A7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26165
GTEX Portal (Tissue expression)SPATA31A7
Human Protein AtlasENSG00000276040-SPATA31A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWB4
PhosPhoSitePlusQ8IWB4
Domains : Interpro (EBI)DUF4599    SPATA31/FAM205   
Domain families : Pfam (Sanger)DUF4599 (PF15371)    FAM75 (PF14650)   
Domain families : Pfam (NCBI)pfam15371    pfam14650   
Conserved Domain (NCBI)SPATA31A7
SuperfamilyQ8IWB4
AlphaFold pdb e-kbQ8IWB4   
Human Protein Atlas [tissue]ENSG00000276040-SPATA31A7 [tissue]
HPRD12954
Protein Interaction databases
DIP (DOE-UCLA)Q8IWB4
IntAct (EBI)Q8IWB4
BioGRIDSPATA31A7
STRING (EMBL)SPATA31A7
ZODIACSPATA31A7
Ontologies - Pathways
QuickGOQ8IWB4
Ontology : AmiGOprotein binding  spermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIprotein binding  spermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A7
Atlas of Cancer Signalling NetworkSPATA31A7
Wikipedia pathwaysSPATA31A7
Orthology - Evolution
OrthoDB26165
GeneTree (enSembl)ENSG00000276040
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A7
Homologs : HomoloGeneSPATA31A7
Homology/Alignments : Family Browser (UCSC)SPATA31A7
Gene fusions - Rearrangements
Fusion : QuiverSPATA31A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A7
dbVarSPATA31A7
ClinVarSPATA31A7
MonarchSPATA31A7
1000_GenomesSPATA31A7 
Exome Variant ServerSPATA31A7
GNOMAD BrowserENSG00000276040
Varsome BrowserSPATA31A7
ACMGSPATA31A7 variants
VarityQ8IWB4
Genomic Variants (DGV)SPATA31A7 [DGVbeta]
DECIPHERSPATA31A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31A7 
Mutations
ICGC Data PortalSPATA31A7 
TCGA Data PortalSPATA31A7 
Broad Tumor PortalSPATA31A7
OASIS PortalSPATA31A7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA31A7
DgiDB (Drug Gene Interaction Database)SPATA31A7
DoCM (Curated mutations)SPATA31A7
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A7
Cancer3DSPATA31A7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616584   
Orphanet
DisGeNETSPATA31A7
MedgenSPATA31A7
Genetic Testing Registry SPATA31A7
NextProtQ8IWB4 [Medical]
GENETestsSPATA31A7
Target ValidationSPATA31A7
Huge Navigator SPATA31A7 [HugePedia]
ClinGenSPATA31A7
Clinical trials, drugs, therapy
MyCancerGenomeSPATA31A7
Protein Interactions : CTDSPATA31A7
Pharm GKB GenePA162387900
PharosQ8IWB4
Clinical trialSPATA31A7
Miscellaneous
canSAR (ICR)SPATA31A7
HarmonizomeSPATA31A7
ARCHS4SPATA31A7
DataMed IndexSPATA31A7
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA31A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:53:42 CET 2022

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