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SPATA31A7 (SPATA31 subfamily A, member 7)

Identity

Alias_namesFAM75A7
SPATA31A4
FAM75A4
family with sequence similarity 75, member A7
SPATA31 subfamily A, member 4
family with sequence similarity 75, member A4
Other aliasC9orf36A
HGNC (Hugo) SPATA31A7
LocusID (NCBI) 26165
Atlas_Id 74128
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 41500679 and ends at 41506922 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31A7   32007
Cards
Entrez_Gene (NCBI)SPATA31A7  26165  SPATA31 subfamily A, member 7
AliasesC9orf36A; FAM75A4; FAM75A7; SPATA31A4
GeneCards (Weizmann)SPATA31A7
Ensembl hg19 (Hinxton)ENSG00000276040 [Gene_View]  chr9:41500679-41506922 [Contig_View]  SPATA31A7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000276040 [Gene_View]  chr9:41500679-41506922 [Contig_View]  SPATA31A7 [Vega]
ICGC DataPortalENSG00000276040
TCGA cBioPortalSPATA31A7
AceView (NCBI)SPATA31A7
Genatlas (Paris)SPATA31A7
WikiGenes26165
SOURCE (Princeton)SPATA31A7
Genetics Home Reference (NIH)SPATA31A7
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA31A7  -     chr9:41500679-41506922 +  9p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA31A7  -     9p12   [Description]    (hg38-Dec_2013)
EnsemblSPATA31A7 - 9p12 [CytoView hg19]  SPATA31A7 - 9p12 [CytoView hg38]
Mapping of homologs : NCBISPATA31A7 [Mapview hg19]  SPATA31A7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040528 DB081004 DB085566
RefSeq transcript (Entrez)NM_015667
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_078052 NW_004929355
Consensus coding sequences : CCDS (NCBI)SPATA31A7
Cluster EST : UnigeneHs.645497 [ NCBI ]
CGAP (NCI)Hs.645497
Alternative Splicing GalleryENSG00000276040
Gene ExpressionSPATA31A7 [ NCBI-GEO ]   SPATA31A7 [ EBI - ARRAY_EXPRESS ]   SPATA31A7 [ SEEK ]   SPATA31A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26165
GTEX Portal (Tissue expression)SPATA31A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWB4
Splice isoforms : SwissVarQ8IWB4
PhosPhoSitePlusQ8IWB4
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31A7
DMDM Disease mutations26165
Blocks (Seattle)SPATA31A7
SuperfamilyQ8IWB4
Human Protein AtlasENSG00000276040
Peptide AtlasQ8IWB4
HPRD12954
IPIIPI00293080   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWB4
IntAct (EBI)Q8IWB4
FunCoupENSG00000276040
BioGRIDSPATA31A7
STRING (EMBL)SPATA31A7
ZODIACSPATA31A7
Ontologies - Pathways
QuickGOQ8IWB4
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31A7
Atlas of Cancer Signalling NetworkSPATA31A7
Wikipedia pathwaysSPATA31A7
Orthology - Evolution
OrthoDB26165
GeneTree (enSembl)ENSG00000276040
Phylogenetic Trees/Animal Genes : TreeFamSPATA31A7
HOVERGENQ8IWB4
HOGENOMQ8IWB4
Homologs : HomoloGeneSPATA31A7
Homology/Alignments : Family Browser (UCSC)SPATA31A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31A7
dbVarSPATA31A7
ClinVarSPATA31A7
1000_GenomesSPATA31A7 
Exome Variant ServerSPATA31A7
ExAC (Exome Aggregation Consortium)SPATA31A7 (select the gene name)
Genetic variants : HAPMAP26165
Genomic Variants (DGV)SPATA31A7 [DGVbeta]
DECIPHER (Syndromes)9:41500679-41506922  ENSG00000276040
CONAN: Copy Number AnalysisSPATA31A7 
Mutations
ICGC Data PortalSPATA31A7 
TCGA Data PortalSPATA31A7 
Broad Tumor PortalSPATA31A7
OASIS PortalSPATA31A7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31A7
DgiDB (Drug Gene Interaction Database)SPATA31A7
DoCM (Curated mutations)SPATA31A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31A7 (select a term)
intoGenSPATA31A7
Cancer3DSPATA31A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31A7
Genetic Testing Registry SPATA31A7
NextProtQ8IWB4 [Medical]
TSGene26165
GENETestsSPATA31A7
Huge Navigator SPATA31A7 [HugePedia]
snp3D : Map Gene to Disease26165
BioCentury BCIQSPATA31A7
ClinGenSPATA31A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26165
Chemical/Pharm GKB GenePA162387900
Clinical trialSPATA31A7
Miscellaneous
canSAR (ICR)SPATA31A7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31A7
EVEXSPATA31A7
GoPubMedSPATA31A7
iHOPSPATA31A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:20 CET 2017

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