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SPATA31C1 (SPATA31 subfamily C member 1)

Identity

Alias_namesFAM75C1
family with sequence similarity 75, member C1
Alias_symbol (synonym)FLJ36055
Other aliasSPATA31C2
HGNC (Hugo) SPATA31C1
LocusID (NCBI) 441452
Atlas_Id 74129
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 87917962 and ends at 87923657 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31C1   27846
Cards
Entrez_Gene (NCBI)SPATA31C1  441452  SPATA31 subfamily C member 1
AliasesFAM75C1; SPATA31C2
GeneCards (Weizmann)SPATA31C1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:87917962-87923657 [Contig_View]  SPATA31C1 [Vega]
TCGA cBioPortalSPATA31C1
AceView (NCBI)SPATA31C1
Genatlas (Paris)SPATA31C1
WikiGenes441452
SOURCE (Princeton)SPATA31C1
Genetics Home Reference (NIH)SPATA31C1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31C1  -     chr9:87917962-87923657 +  9q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31C1  -     9q22.1   [Description]    (hg19-Feb_2009)
EnsemblSPATA31C1 - 9q22.1 [CytoView hg19]  SPATA31C1 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBISPATA31C1 [Mapview hg19]  SPATA31C1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093374 DB065037
RefSeq transcript (Entrez)NM_001145124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31C1
Cluster EST : UnigeneHs.652956 [ NCBI ]
CGAP (NCI)Hs.652956
Gene ExpressionSPATA31C1 [ NCBI-GEO ]   SPATA31C1 [ EBI - ARRAY_EXPRESS ]   SPATA31C1 [ SEEK ]   SPATA31C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441452
GTEX Portal (Tissue expression)SPATA31C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DKV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DKV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DKV0
Splice isoforms : SwissVarP0DKV0
PhosPhoSitePlusP0DKV0
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31C1
DMDM Disease mutations441452
Blocks (Seattle)SPATA31C1
SuperfamilyP0DKV0
Peptide AtlasP0DKV0
IPIIPI00783899   
Protein Interaction databases
DIP (DOE-UCLA)P0DKV0
IntAct (EBI)P0DKV0
BioGRIDSPATA31C1
STRING (EMBL)SPATA31C1
ZODIACSPATA31C1
Ontologies - Pathways
QuickGOP0DKV0
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31C1
Atlas of Cancer Signalling NetworkSPATA31C1
Wikipedia pathwaysSPATA31C1
Orthology - Evolution
OrthoDB441452
Phylogenetic Trees/Animal Genes : TreeFamSPATA31C1
HOVERGENP0DKV0
HOGENOMP0DKV0
Homologs : HomoloGeneSPATA31C1
Homology/Alignments : Family Browser (UCSC)SPATA31C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31C1
dbVarSPATA31C1
ClinVarSPATA31C1
1000_GenomesSPATA31C1 
Exome Variant ServerSPATA31C1
ExAC (Exome Aggregation Consortium)SPATA31C1 (select the gene name)
Genetic variants : HAPMAP441452
Genomic Variants (DGV)SPATA31C1 [DGVbeta]
DECIPHERSPATA31C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31C1 
Mutations
ICGC Data PortalSPATA31C1 
TCGA Data PortalSPATA31C1 
Broad Tumor PortalSPATA31C1
OASIS PortalSPATA31C1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31C1
BioMutasearch SPATA31C1
DgiDB (Drug Gene Interaction Database)SPATA31C1
DoCM (Curated mutations)SPATA31C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31C1 (select a term)
intoGenSPATA31C1
Cancer3DSPATA31C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31C1
Genetic Testing Registry SPATA31C1
NextProtP0DKV0 [Medical]
TSGene441452
GENETestsSPATA31C1
Target ValidationSPATA31C1
Huge Navigator SPATA31C1 [HugePedia]
snp3D : Map Gene to Disease441452
BioCentury BCIQSPATA31C1
ClinGenSPATA31C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441452
Chemical/Pharm GKB GenePA164719942
Clinical trialSPATA31C1
Miscellaneous
canSAR (ICR)SPATA31C1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31C1
EVEXSPATA31C1
GoPubMedSPATA31C1
iHOPSPATA31C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:48 CEST 2017

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