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SPATA31C2 (SPATA31 subfamily C, member 2)

Identity

Alias_namesFAM75C2
family with sequence similarity 75, member C2
Alias_symbol (synonym)DKFZP434M131
Other alias
HGNC (Hugo) SPATA31C2
LocusID (NCBI) 645961
Atlas_Id 74130
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 90744220 and ends at 90749900 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31C2   24508
Cards
Entrez_Gene (NCBI)SPATA31C2  645961  SPATA31 subfamily C, member 2
AliasesFAM75C2
GeneCards (Weizmann)SPATA31C2
Ensembl hg19 (Hinxton) [Gene_View]  chr9:90744220-90749900 [Contig_View]  SPATA31C2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:90744220-90749900 [Contig_View]  SPATA31C2 [Vega]
TCGA cBioPortalSPATA31C2
AceView (NCBI)SPATA31C2
Genatlas (Paris)SPATA31C2
WikiGenes645961
SOURCE (Princeton)SPATA31C2
Genetics Home Reference (NIH)SPATA31C2
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA31C2  -     chr9:90744220-90749900 -  9q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA31C2  -     9q22.1   [Description]    (hg38-Dec_2013)
EnsemblSPATA31C2 - 9q22.1 [CytoView hg19]  SPATA31C2 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBISPATA31C2 [Mapview hg19]  SPATA31C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096956 AK302448 AL080179 DB061043
RefSeq transcript (Entrez)NM_001166137
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SPATA31C2
Cluster EST : UnigeneHs.632070 [ NCBI ]
CGAP (NCI)Hs.632070
Gene ExpressionSPATA31C2 [ NCBI-GEO ]   SPATA31C2 [ EBI - ARRAY_EXPRESS ]   SPATA31C2 [ SEEK ]   SPATA31C2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645961
GTEX Portal (Tissue expression)SPATA31C2
Protein : pattern, domain, 3D structure
UniProt/SwissProtB4DYI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB4DYI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB4DYI2
Splice isoforms : SwissVarB4DYI2
PhosPhoSitePlusB4DYI2
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31C2
DMDM Disease mutations645961
Blocks (Seattle)SPATA31C2
SuperfamilyB4DYI2
Peptide AtlasB4DYI2
IPIIPI00174391   
Protein Interaction databases
DIP (DOE-UCLA)B4DYI2
IntAct (EBI)B4DYI2
BioGRIDSPATA31C2
STRING (EMBL)SPATA31C2
ZODIACSPATA31C2
Ontologies - Pathways
QuickGOB4DYI2
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31C2
Atlas of Cancer Signalling NetworkSPATA31C2
Wikipedia pathwaysSPATA31C2
Orthology - Evolution
OrthoDB645961
Phylogenetic Trees/Animal Genes : TreeFamSPATA31C2
HOVERGENB4DYI2
HOGENOMB4DYI2
Homologs : HomoloGeneSPATA31C2
Homology/Alignments : Family Browser (UCSC)SPATA31C2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31C2
dbVarSPATA31C2
ClinVarSPATA31C2
1000_GenomesSPATA31C2 
Exome Variant ServerSPATA31C2
ExAC (Exome Aggregation Consortium)SPATA31C2 (select the gene name)
Genetic variants : HAPMAP645961
Genomic Variants (DGV)SPATA31C2 [DGVbeta]
DECIPHER (Syndromes)9:90744220-90749900  
CONAN: Copy Number AnalysisSPATA31C2 
Mutations
ICGC Data PortalSPATA31C2 
TCGA Data PortalSPATA31C2 
Broad Tumor PortalSPATA31C2
OASIS PortalSPATA31C2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31C2
DgiDB (Drug Gene Interaction Database)SPATA31C2
DoCM (Curated mutations)SPATA31C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31C2 (select a term)
intoGenSPATA31C2
Cancer3DSPATA31C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31C2
Genetic Testing Registry SPATA31C2
NextProtB4DYI2 [Medical]
TSGene645961
GENETestsSPATA31C2
Huge Navigator SPATA31C2 [HugePedia]
snp3D : Map Gene to Disease645961
BioCentury BCIQSPATA31C2
ClinGenSPATA31C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645961
Chemical/Pharm GKB GenePA162387924
Clinical trialSPATA31C2
Miscellaneous
canSAR (ICR)SPATA31C2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31C2
EVEXSPATA31C2
GoPubMedSPATA31C2
iHOPSPATA31C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:20 CET 2017

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