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SPATA31D1 (SPATA31 subfamily D member 1)

Identity

Alias_namesFAM75D1
family with sequence similarity 75, member D1
Alias_symbol (synonym)FLJ46321
Other alias
HGNC (Hugo) SPATA31D1
LocusID (NCBI) 389763
Atlas_Id 74131
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 81988772 and ends at 81995256 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31D1   37283
Cards
Entrez_Gene (NCBI)SPATA31D1  389763  SPATA31 subfamily D member 1
AliasesFAM75D1
GeneCards (Weizmann)SPATA31D1
Ensembl hg19 (Hinxton)ENSG00000214929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214929 [Gene_View]  chr9:81988772-81995256 [Contig_View]  SPATA31D1 [Vega]
ICGC DataPortalENSG00000214929
TCGA cBioPortalSPATA31D1
AceView (NCBI)SPATA31D1
Genatlas (Paris)SPATA31D1
WikiGenes389763
SOURCE (Princeton)SPATA31D1
Genetics Home Reference (NIH)SPATA31D1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31D1  -     chr9:81988772-81995256 +  9q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31D1  -     9q21.32   [Description]    (hg19-Feb_2009)
EnsemblSPATA31D1 - 9q21.32 [CytoView hg19]  SPATA31D1 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBISPATA31D1 [Mapview hg19]  SPATA31D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128831
RefSeq transcript (Entrez)NM_001001670
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31D1
Cluster EST : UnigeneHs.209545 [ NCBI ]
CGAP (NCI)Hs.209545
Alternative Splicing GalleryENSG00000214929
Gene ExpressionSPATA31D1 [ NCBI-GEO ]   SPATA31D1 [ EBI - ARRAY_EXPRESS ]   SPATA31D1 [ SEEK ]   SPATA31D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389763
GTEX Portal (Tissue expression)SPATA31D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQQ2
Splice isoforms : SwissVarQ6ZQQ2
PhosPhoSitePlusQ6ZQQ2
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31D1
DMDM Disease mutations389763
Blocks (Seattle)SPATA31D1
SuperfamilyQ6ZQQ2
Human Protein AtlasENSG00000214929
Peptide AtlasQ6ZQQ2
HPRD13531
IPIIPI00399119   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQQ2
IntAct (EBI)Q6ZQQ2
FunCoupENSG00000214929
BioGRIDSPATA31D1
STRING (EMBL)SPATA31D1
ZODIACSPATA31D1
Ontologies - Pathways
QuickGOQ6ZQQ2
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31D1
Atlas of Cancer Signalling NetworkSPATA31D1
Wikipedia pathwaysSPATA31D1
Orthology - Evolution
OrthoDB389763
GeneTree (enSembl)ENSG00000214929
Phylogenetic Trees/Animal Genes : TreeFamSPATA31D1
HOVERGENQ6ZQQ2
HOGENOMQ6ZQQ2
Homologs : HomoloGeneSPATA31D1
Homology/Alignments : Family Browser (UCSC)SPATA31D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31D1
dbVarSPATA31D1
ClinVarSPATA31D1
1000_GenomesSPATA31D1 
Exome Variant ServerSPATA31D1
ExAC (Exome Aggregation Consortium)SPATA31D1 (select the gene name)
Genetic variants : HAPMAP389763
Genomic Variants (DGV)SPATA31D1 [DGVbeta]
DECIPHERSPATA31D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31D1 
Mutations
ICGC Data PortalSPATA31D1 
TCGA Data PortalSPATA31D1 
Broad Tumor PortalSPATA31D1
OASIS PortalSPATA31D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31D1
DgiDB (Drug Gene Interaction Database)SPATA31D1
DoCM (Curated mutations)SPATA31D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31D1 (select a term)
intoGenSPATA31D1
Cancer3DSPATA31D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31D1
Genetic Testing Registry SPATA31D1
NextProtQ6ZQQ2 [Medical]
TSGene389763
GENETestsSPATA31D1
Target ValidationSPATA31D1
Huge Navigator SPATA31D1 [HugePedia]
snp3D : Map Gene to Disease389763
BioCentury BCIQSPATA31D1
ClinGenSPATA31D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389763
Chemical/Pharm GKB GenePA166049029
Clinical trialSPATA31D1
Miscellaneous
canSAR (ICR)SPATA31D1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31D1
EVEXSPATA31D1
GoPubMedSPATA31D1
iHOPSPATA31D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:14 CEST 2017

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