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SPATA31D3 (SPATA31 subfamily D, member 3)

Identity

Alias_namesFAM75D3
family with sequence similarity 75, member D3
Alias_symbol (synonym)FLJ44082
Other alias
HGNC (Hugo) SPATA31D3
LocusID (NCBI) 389762
Atlas_Id 74132
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 84558415 and ends at 84565009 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31D3   38603
Cards
Entrez_Gene (NCBI)SPATA31D3  389762  SPATA31 subfamily D, member 3
AliasesFAM75D3
GeneCards (Weizmann)SPATA31D3
Ensembl hg19 (Hinxton) [Gene_View]  chr9:84558415-84565009 [Contig_View]  SPATA31D3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:84558415-84565009 [Contig_View]  SPATA31D3 [Vega]
TCGA cBioPortalSPATA31D3
AceView (NCBI)SPATA31D3
Genatlas (Paris)SPATA31D3
WikiGenes389762
SOURCE (Princeton)SPATA31D3
Genetics Home Reference (NIH)SPATA31D3
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA31D3  -     chr9:84558415-84565009 +  9q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA31D3  -     9q21.32   [Description]    (hg38-Dec_2013)
EnsemblSPATA31D3 - 9q21.32 [CytoView hg19]  SPATA31D3 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBISPATA31D3 [Mapview hg19]  SPATA31D3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126070
RefSeq transcript (Entrez)NM_207416
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SPATA31D3
Cluster EST : UnigeneHs.522246 [ NCBI ]
CGAP (NCI)Hs.522246
Gene ExpressionSPATA31D3 [ NCBI-GEO ]   SPATA31D3 [ EBI - ARRAY_EXPRESS ]   SPATA31D3 [ SEEK ]   SPATA31D3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389762
GTEX Portal (Tissue expression)SPATA31D3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C874   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C874  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C874
Splice isoforms : SwissVarP0C874
PhosPhoSitePlusP0C874
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31D3
DMDM Disease mutations389762
Blocks (Seattle)SPATA31D3
SuperfamilyP0C874
Peptide AtlasP0C874
IPIIPI00903333   
Protein Interaction databases
DIP (DOE-UCLA)P0C874
IntAct (EBI)P0C874
BioGRIDSPATA31D3
STRING (EMBL)SPATA31D3
ZODIACSPATA31D3
Ontologies - Pathways
QuickGOP0C874
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31D3
Atlas of Cancer Signalling NetworkSPATA31D3
Wikipedia pathwaysSPATA31D3
Orthology - Evolution
OrthoDB389762
Phylogenetic Trees/Animal Genes : TreeFamSPATA31D3
HOVERGENP0C874
HOGENOMP0C874
Homologs : HomoloGeneSPATA31D3
Homology/Alignments : Family Browser (UCSC)SPATA31D3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31D3
dbVarSPATA31D3
ClinVarSPATA31D3
1000_GenomesSPATA31D3 
Exome Variant ServerSPATA31D3
ExAC (Exome Aggregation Consortium)SPATA31D3 (select the gene name)
Genetic variants : HAPMAP389762
Genomic Variants (DGV)SPATA31D3 [DGVbeta]
DECIPHER (Syndromes)9:84558415-84565009  
CONAN: Copy Number AnalysisSPATA31D3 
Mutations
ICGC Data PortalSPATA31D3 
TCGA Data PortalSPATA31D3 
Broad Tumor PortalSPATA31D3
OASIS PortalSPATA31D3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31D3
DgiDB (Drug Gene Interaction Database)SPATA31D3
DoCM (Curated mutations)SPATA31D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31D3 (select a term)
intoGenSPATA31D3
Cancer3DSPATA31D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31D3
Genetic Testing Registry SPATA31D3
NextProtP0C874 [Medical]
TSGene389762
GENETestsSPATA31D3
Huge Navigator SPATA31D3 [HugePedia]
snp3D : Map Gene to Disease389762
BioCentury BCIQSPATA31D3
ClinGenSPATA31D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389762
Clinical trialSPATA31D3
Miscellaneous
canSAR (ICR)SPATA31D3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31D3
EVEXSPATA31D3
GoPubMedSPATA31D3
iHOPSPATA31D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:21 CET 2017

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