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SPATA31D4 (SPATA31 subfamily D member 4)

Identity

Alias_namesFAM75D4
family with sequence similarity 75, member D4
Alias_symbol (synonym)FLJ43859
Other alias
HGNC (Hugo) SPATA31D4
LocusID (NCBI) 389761
Atlas_Id 74133
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 81928428 and ends at 81934998 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31D4   38601
Cards
Entrez_Gene (NCBI)SPATA31D4  389761  SPATA31 subfamily D member 4
AliasesFAM75D4
GeneCards (Weizmann)SPATA31D4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:81928428-81934998 [Contig_View]  SPATA31D4 [Vega]
TCGA cBioPortalSPATA31D4
AceView (NCBI)SPATA31D4
Genatlas (Paris)SPATA31D4
WikiGenes389761
SOURCE (Princeton)SPATA31D4
Genetics Home Reference (NIH)SPATA31D4
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA31D4  -     chr9:81928428-81934998 +  9q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA31D4  -     9q21.32   [Description]    (hg19-Feb_2009)
EnsemblSPATA31D4 - 9q21.32 [CytoView hg19]  SPATA31D4 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBISPATA31D4 [Mapview hg19]  SPATA31D4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125847 AK308327
RefSeq transcript (Entrez)NM_001145197 NM_207415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA31D4
Cluster EST : UnigeneHs.722630 [ NCBI ]
CGAP (NCI)Hs.722630
Gene ExpressionSPATA31D4 [ NCBI-GEO ]   SPATA31D4 [ EBI - ARRAY_EXPRESS ]   SPATA31D4 [ SEEK ]   SPATA31D4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31D4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389761
GTEX Portal (Tissue expression)SPATA31D4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUB0
Splice isoforms : SwissVarQ6ZUB0
PhosPhoSitePlusQ6ZUB0
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31D4
DMDM Disease mutations389761
Blocks (Seattle)SPATA31D4
SuperfamilyQ6ZUB0
Peptide AtlasQ6ZUB0
IPIIPI00415064   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUB0
IntAct (EBI)Q6ZUB0
BioGRIDSPATA31D4
STRING (EMBL)SPATA31D4
ZODIACSPATA31D4
Ontologies - Pathways
QuickGOQ6ZUB0
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31D4
Atlas of Cancer Signalling NetworkSPATA31D4
Wikipedia pathwaysSPATA31D4
Orthology - Evolution
OrthoDB389761
Phylogenetic Trees/Animal Genes : TreeFamSPATA31D4
HOVERGENQ6ZUB0
HOGENOMQ6ZUB0
Homologs : HomoloGeneSPATA31D4
Homology/Alignments : Family Browser (UCSC)SPATA31D4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31D4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31D4
dbVarSPATA31D4
ClinVarSPATA31D4
1000_GenomesSPATA31D4 
Exome Variant ServerSPATA31D4
ExAC (Exome Aggregation Consortium)SPATA31D4 (select the gene name)
Genetic variants : HAPMAP389761
Genomic Variants (DGV)SPATA31D4 [DGVbeta]
DECIPHERSPATA31D4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA31D4 
Mutations
ICGC Data PortalSPATA31D4 
TCGA Data PortalSPATA31D4 
Broad Tumor PortalSPATA31D4
OASIS PortalSPATA31D4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31D4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA31D4
DgiDB (Drug Gene Interaction Database)SPATA31D4
DoCM (Curated mutations)SPATA31D4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31D4 (select a term)
intoGenSPATA31D4
Cancer3DSPATA31D4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31D4
Genetic Testing Registry SPATA31D4
NextProtQ6ZUB0 [Medical]
TSGene389761
GENETestsSPATA31D4
Target ValidationSPATA31D4
Huge Navigator SPATA31D4 [HugePedia]
snp3D : Map Gene to Disease389761
BioCentury BCIQSPATA31D4
ClinGenSPATA31D4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389761
Chemical/Pharm GKB GenePA166049031
Clinical trialSPATA31D4
Miscellaneous
canSAR (ICR)SPATA31D4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31D4
EVEXSPATA31D4
GoPubMedSPATA31D4
iHOPSPATA31D4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:14 CEST 2017

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