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SPATA31E1 (SPATA31 subfamily E, member 1)

Identity

Alias_namesC9orf79
FAM75E1
chromosome 9 open reading frame 79
family with sequence similarity 75, member E1
Alias_symbol (synonym)FLJ35866
Other alias
HGNC (Hugo) SPATA31E1
LocusID (NCBI) 286234
Atlas_Id 74135
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 90497772 and ends at 90503814 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA31E1   26672
Cards
Entrez_Gene (NCBI)SPATA31E1  286234  SPATA31 subfamily E, member 1
AliasesC9orf79; FAM75E1
GeneCards (Weizmann)SPATA31E1
Ensembl hg19 (Hinxton)ENSG00000177992 [Gene_View]  chr9:90497772-90503814 [Contig_View]  SPATA31E1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177992 [Gene_View]  chr9:90497772-90503814 [Contig_View]  SPATA31E1 [Vega]
ICGC DataPortalENSG00000177992
TCGA cBioPortalSPATA31E1
AceView (NCBI)SPATA31E1
Genatlas (Paris)SPATA31E1
WikiGenes286234
SOURCE (Princeton)SPATA31E1
Genetics Home Reference (NIH)SPATA31E1
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA31E1  -     chr9:90497772-90503814 +  9q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA31E1  -     9q22.1   [Description]    (hg38-Dec_2013)
EnsemblSPATA31E1 - 9q22.1 [CytoView hg19]  SPATA31E1 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBISPATA31E1 [Mapview hg19]  SPATA31E1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093185 AK093206 AK125845 AL834438 BC137349
RefSeq transcript (Entrez)NM_178828
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SPATA31E1
Cluster EST : UnigeneHs.130672 [ NCBI ]
CGAP (NCI)Hs.130672
Alternative Splicing GalleryENSG00000177992
Gene ExpressionSPATA31E1 [ NCBI-GEO ]   SPATA31E1 [ EBI - ARRAY_EXPRESS ]   SPATA31E1 [ SEEK ]   SPATA31E1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA31E1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286234
GTEX Portal (Tissue expression)SPATA31E1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUB1
Splice isoforms : SwissVarQ6ZUB1
PhosPhoSitePlusQ6ZUB1
Domains : Interpro (EBI)DUF4599   
Domain families : Pfam (Sanger)DUF4599 (PF15371)   
Domain families : Pfam (NCBI)pfam15371   
Conserved Domain (NCBI)SPATA31E1
DMDM Disease mutations286234
Blocks (Seattle)SPATA31E1
SuperfamilyQ6ZUB1
Human Protein AtlasENSG00000177992
Peptide AtlasQ6ZUB1
HPRD12979
IPIIPI00168442   IPI01013275   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUB1
IntAct (EBI)Q6ZUB1
FunCoupENSG00000177992
BioGRIDSPATA31E1
STRING (EMBL)SPATA31E1
ZODIACSPATA31E1
Ontologies - Pathways
QuickGOQ6ZUB1
Ontology : AmiGOspermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA31E1
Atlas of Cancer Signalling NetworkSPATA31E1
Wikipedia pathwaysSPATA31E1
Orthology - Evolution
OrthoDB286234
GeneTree (enSembl)ENSG00000177992
Phylogenetic Trees/Animal Genes : TreeFamSPATA31E1
HOVERGENQ6ZUB1
HOGENOMQ6ZUB1
Homologs : HomoloGeneSPATA31E1
Homology/Alignments : Family Browser (UCSC)SPATA31E1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA31E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA31E1
dbVarSPATA31E1
ClinVarSPATA31E1
1000_GenomesSPATA31E1 
Exome Variant ServerSPATA31E1
ExAC (Exome Aggregation Consortium)SPATA31E1 (select the gene name)
Genetic variants : HAPMAP286234
Genomic Variants (DGV)SPATA31E1 [DGVbeta]
DECIPHER (Syndromes)9:90497772-90503814  ENSG00000177992
CONAN: Copy Number AnalysisSPATA31E1 
Mutations
ICGC Data PortalSPATA31E1 
TCGA Data PortalSPATA31E1 
Broad Tumor PortalSPATA31E1
OASIS PortalSPATA31E1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA31E1
BioMutasearch SPATA31E1
DgiDB (Drug Gene Interaction Database)SPATA31E1
DoCM (Curated mutations)SPATA31E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA31E1 (select a term)
intoGenSPATA31E1
Cancer3DSPATA31E1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA31E1
Genetic Testing Registry SPATA31E1
NextProtQ6ZUB1 [Medical]
TSGene286234
GENETestsSPATA31E1
Huge Navigator SPATA31E1 [HugePedia]
snp3D : Map Gene to Disease286234
BioCentury BCIQSPATA31E1
ClinGenSPATA31E1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286234
Chemical/Pharm GKB GenePA134886884
Clinical trialSPATA31E1
Miscellaneous
canSAR (ICR)SPATA31E1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA31E1
EVEXSPATA31E1
GoPubMedSPATA31E1
iHOPSPATA31E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:21 CET 2017

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