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SPATA32 (spermatogenesis associated 32)

Identity

Alias (NCBI)AEP2
C17orf46
TEX34
VAD1.2
HGNC (Hugo) SPATA32
HGNC Alias symbFLJ25414
AEP2
VAD1.2
HGNC Alias nameacrosome expressed 2
HGNC Previous nameC17orf46
 TEX34
HGNC Previous namechromosome 17 open reading frame 46
 testis expressed 34
LocusID (NCBI) 124783
Atlas_Id 74136
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45254393 and ends at 45262094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA32   26349
Cards
Entrez_Gene (NCBI)SPATA32    spermatogenesis associated 32
AliasesAEP2; C17orf46; TEX34; VAD1.2
GeneCards (Weizmann)SPATA32
Ensembl hg19 (Hinxton)ENSG00000184361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184361 [Gene_View]  ENSG00000184361 [Sequence]  chr17:45254393-45262094 [Contig_View]  SPATA32 [Vega]
ICGC DataPortalENSG00000184361
TCGA cBioPortalSPATA32
AceView (NCBI)SPATA32
Genatlas (Paris)SPATA32
SOURCE (Princeton)SPATA32
Genetics Home Reference (NIH)SPATA32
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA32  -     chr17:45254393-45262094 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA32  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathSPATA32 - 17q21.31 [CytoView hg19]  SPATA32 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000184361
Genome Data Viewer NCBISPATA32 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF433663 AK058143 AK302184 BC028124 BP369808
RefSeq transcript (Entrez)NM_152343
Consensus coding sequences : CCDS (NCBI)SPATA32
Gene ExpressionSPATA32 [ NCBI-GEO ]   SPATA32 [ EBI - ARRAY_EXPRESS ]   SPATA32 [ SEEK ]   SPATA32 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA32 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA32 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124783
GTEX Portal (Tissue expression)SPATA32
Human Protein AtlasENSG00000184361-SPATA32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LK8
PhosPhoSitePlusQ96LK8
Domains : Interpro (EBI)SPATA32   
Domain families : Pfam (Sanger)VAD1-2 (PF15310)   
Domain families : Pfam (NCBI)pfam15310   
Conserved Domain (NCBI)SPATA32
SuperfamilyQ96LK8
AlphaFold pdb e-kbQ96LK8   
Human Protein Atlas [tissue]ENSG00000184361-SPATA32 [tissue]
HPRD08690
Protein Interaction databases
DIP (DOE-UCLA)Q96LK8
IntAct (EBI)Q96LK8
BioGRIDSPATA32
STRING (EMBL)SPATA32
ZODIACSPATA32
Ontologies - Pathways
QuickGOQ96LK8
Ontology : AmiGOactin binding  protein binding  spermatogenesis  perinuclear region of cytoplasm  
Ontology : EGO-EBIactin binding  protein binding  spermatogenesis  perinuclear region of cytoplasm  
NDEx NetworkSPATA32
Atlas of Cancer Signalling NetworkSPATA32
Wikipedia pathwaysSPATA32
Orthology - Evolution
OrthoDB124783
GeneTree (enSembl)ENSG00000184361
Phylogenetic Trees/Animal Genes : TreeFamSPATA32
Homologs : HomoloGeneSPATA32
Homology/Alignments : Family Browser (UCSC)SPATA32
Gene fusions - Rearrangements
Fusion : QuiverSPATA32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA32
dbVarSPATA32
ClinVarSPATA32
MonarchSPATA32
1000_GenomesSPATA32 
Exome Variant ServerSPATA32
GNOMAD BrowserENSG00000184361
Varsome BrowserSPATA32
ACMGSPATA32 variants
VarityQ96LK8
Genomic Variants (DGV)SPATA32 [DGVbeta]
DECIPHERSPATA32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA32 
Mutations
ICGC Data PortalSPATA32 
TCGA Data PortalSPATA32 
Broad Tumor PortalSPATA32
OASIS PortalSPATA32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA32  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATA32
Mutations and Diseases : HGMDSPATA32
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA32
DgiDB (Drug Gene Interaction Database)SPATA32
DoCM (Curated mutations)SPATA32
CIViC (Clinical Interpretations of Variants in Cancer)SPATA32
Cancer3DSPATA32
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATA32
MedgenSPATA32
Genetic Testing Registry SPATA32
NextProtQ96LK8 [Medical]
GENETestsSPATA32
Target ValidationSPATA32
Huge Navigator SPATA32 [HugePedia]
ClinGenSPATA32
Clinical trials, drugs, therapy
MyCancerGenomeSPATA32
Protein Interactions : CTDSPATA32
Pharm GKB GenePA142672229
PharosQ96LK8
Clinical trialSPATA32
Miscellaneous
canSAR (ICR)SPATA32
HarmonizomeSPATA32
DataMed IndexSPATA32
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:23:52 CEST 2021

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