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SPATA32 (spermatogenesis associated 32)

Identity

Alias_namesC17orf46
TEX34
chromosome 17 open reading frame 46
testis expressed 34
Alias_symbol (synonym)FLJ25414
AEP2
VAD1.2
Other alias
HGNC (Hugo) SPATA32
LocusID (NCBI) 124783
Atlas_Id 74136
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45254393 and ends at 45262112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA32   26349
Cards
Entrez_Gene (NCBI)SPATA32  124783  spermatogenesis associated 32
AliasesAEP2; C17orf46; TEX34; VAD1.2
GeneCards (Weizmann)SPATA32
Ensembl hg19 (Hinxton)ENSG00000184361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184361 [Gene_View]  chr17:45254393-45262112 [Contig_View]  SPATA32 [Vega]
ICGC DataPortalENSG00000184361
TCGA cBioPortalSPATA32
AceView (NCBI)SPATA32
Genatlas (Paris)SPATA32
WikiGenes124783
SOURCE (Princeton)SPATA32
Genetics Home Reference (NIH)SPATA32
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA32  -     chr17:45254393-45262112 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA32  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblSPATA32 - 17q21.31 [CytoView hg19]  SPATA32 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBISPATA32 [Mapview hg19]  SPATA32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF433663 AK058143 AK302184 BC028124 BP369808
RefSeq transcript (Entrez)NM_152343
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA32
Cluster EST : UnigeneHs.412719 [ NCBI ]
CGAP (NCI)Hs.412719
Alternative Splicing GalleryENSG00000184361
Gene ExpressionSPATA32 [ NCBI-GEO ]   SPATA32 [ EBI - ARRAY_EXPRESS ]   SPATA32 [ SEEK ]   SPATA32 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124783
GTEX Portal (Tissue expression)SPATA32
Human Protein AtlasENSG00000184361-SPATA32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LK8
Splice isoforms : SwissVarQ96LK8
PhosPhoSitePlusQ96LK8
Domains : Interpro (EBI)SPATA32   
Domain families : Pfam (Sanger)VAD1-2 (PF15310)   
Domain families : Pfam (NCBI)pfam15310   
Conserved Domain (NCBI)SPATA32
DMDM Disease mutations124783
Blocks (Seattle)SPATA32
SuperfamilyQ96LK8
Human Protein Atlas [tissue]ENSG00000184361-SPATA32 [tissue]
Peptide AtlasQ96LK8
HPRD08690
IPIIPI00297522   IPI01013217   
Protein Interaction databases
DIP (DOE-UCLA)Q96LK8
IntAct (EBI)Q96LK8
FunCoupENSG00000184361
BioGRIDSPATA32
STRING (EMBL)SPATA32
ZODIACSPATA32
Ontologies - Pathways
QuickGOQ96LK8
Ontology : AmiGOactin binding  spermatogenesis  perinuclear region of cytoplasm  
Ontology : EGO-EBIactin binding  spermatogenesis  perinuclear region of cytoplasm  
NDEx NetworkSPATA32
Atlas of Cancer Signalling NetworkSPATA32
Wikipedia pathwaysSPATA32
Orthology - Evolution
OrthoDB124783
GeneTree (enSembl)ENSG00000184361
Phylogenetic Trees/Animal Genes : TreeFamSPATA32
HOVERGENQ96LK8
HOGENOMQ96LK8
Homologs : HomoloGeneSPATA32
Homology/Alignments : Family Browser (UCSC)SPATA32
Gene fusions - Rearrangements
Fusion: Tumor Portal SPATA32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA32
dbVarSPATA32
ClinVarSPATA32
1000_GenomesSPATA32 
Exome Variant ServerSPATA32
ExAC (Exome Aggregation Consortium)ENSG00000184361
GNOMAD BrowserENSG00000184361
Genetic variants : HAPMAP124783
Genomic Variants (DGV)SPATA32 [DGVbeta]
DECIPHERSPATA32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA32 
Mutations
ICGC Data PortalSPATA32 
TCGA Data PortalSPATA32 
Broad Tumor PortalSPATA32
OASIS PortalSPATA32 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA32
BioMutasearch SPATA32
DgiDB (Drug Gene Interaction Database)SPATA32
DoCM (Curated mutations)SPATA32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA32 (select a term)
intoGenSPATA32
Cancer3DSPATA32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA32
Genetic Testing Registry SPATA32
NextProtQ96LK8 [Medical]
TSGene124783
GENETestsSPATA32
Target ValidationSPATA32
Huge Navigator SPATA32 [HugePedia]
snp3D : Map Gene to Disease124783
BioCentury BCIQSPATA32
ClinGenSPATA32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124783
Chemical/Pharm GKB GenePA142672229
Clinical trialSPATA32
Miscellaneous
canSAR (ICR)SPATA32 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA32
EVEXSPATA32
GoPubMedSPATA32
iHOPSPATA32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:40 CET 2017

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