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SPATA33 (spermatogenesis associated 33)

Identity

Alias_namesC16orf55
chromosome 16 open reading frame 55
Alias_symbol (synonym)FLJ31606
Other alias
HGNC (Hugo) SPATA33
LocusID (NCBI) 124045
Atlas_Id 74137
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89657804 and ends at 89670458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK10 (16q24.3) / SPATA33 (16q24.3)SPATA33 (16q24.3) / DPEP1 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA33   26463
Cards
Entrez_Gene (NCBI)SPATA33  124045  spermatogenesis associated 33
AliasesC16orf55
GeneCards (Weizmann)SPATA33
Ensembl hg19 (Hinxton)ENSG00000167523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167523 [Gene_View]  chr16:89657804-89670458 [Contig_View]  SPATA33 [Vega]
ICGC DataPortalENSG00000167523
TCGA cBioPortalSPATA33
AceView (NCBI)SPATA33
Genatlas (Paris)SPATA33
WikiGenes124045
SOURCE (Princeton)SPATA33
Genetics Home Reference (NIH)SPATA33
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA33  -     chr16:89657804-89670458 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA33  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA33 - 16q24.3 [CytoView hg19]  SPATA33 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBISPATA33 [Mapview hg19]  SPATA33 [Mapview hg38]
OMIM615409   
Gene and transcription
Genbank (Entrez)AK056168 AK125673 AK128803 AK303024 BC045670
RefSeq transcript (Entrez)NM_001271907 NM_001271908 NM_001271909 NM_001271910 NM_153025
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA33
Cluster EST : UnigeneHs.655171 [ NCBI ]
CGAP (NCI)Hs.655171
Alternative Splicing GalleryENSG00000167523
Gene ExpressionSPATA33 [ NCBI-GEO ]   SPATA33 [ EBI - ARRAY_EXPRESS ]   SPATA33 [ SEEK ]   SPATA33 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124045
GTEX Portal (Tissue expression)SPATA33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N06
Splice isoforms : SwissVarQ96N06
PhosPhoSitePlusQ96N06
Domains : Interpro (EBI)DUF4609   
Domain families : Pfam (Sanger)DUF4609 (PF15382)   
Domain families : Pfam (NCBI)pfam15382   
Conserved Domain (NCBI)SPATA33
DMDM Disease mutations124045
Blocks (Seattle)SPATA33
SuperfamilyQ96N06
Human Protein AtlasENSG00000167523
Peptide AtlasQ96N06
HPRD08105
IPIIPI00043271   IPI00911117   IPI00384538   
Protein Interaction databases
DIP (DOE-UCLA)Q96N06
IntAct (EBI)Q96N06
FunCoupENSG00000167523
BioGRIDSPATA33
STRING (EMBL)SPATA33
ZODIACSPATA33
Ontologies - Pathways
QuickGOQ96N06
Ontology : AmiGOnucleus  cytosol  
Ontology : EGO-EBInucleus  cytosol  
NDEx NetworkSPATA33
Atlas of Cancer Signalling NetworkSPATA33
Wikipedia pathwaysSPATA33
Orthology - Evolution
OrthoDB124045
GeneTree (enSembl)ENSG00000167523
Phylogenetic Trees/Animal Genes : TreeFamSPATA33
HOVERGENQ96N06
HOGENOMQ96N06
Homologs : HomoloGeneSPATA33
Homology/Alignments : Family Browser (UCSC)SPATA33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA33
dbVarSPATA33
ClinVarSPATA33
1000_GenomesSPATA33 
Exome Variant ServerSPATA33
ExAC (Exome Aggregation Consortium)SPATA33 (select the gene name)
Genetic variants : HAPMAP124045
Genomic Variants (DGV)SPATA33 [DGVbeta]
DECIPHERSPATA33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA33 
Mutations
ICGC Data PortalSPATA33 
TCGA Data PortalSPATA33 
Broad Tumor PortalSPATA33
OASIS PortalSPATA33 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA33
BioMutasearch SPATA33
DgiDB (Drug Gene Interaction Database)SPATA33
DoCM (Curated mutations)SPATA33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA33 (select a term)
intoGenSPATA33
Cancer3DSPATA33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615409   
Orphanet
MedgenSPATA33
Genetic Testing Registry SPATA33
NextProtQ96N06 [Medical]
TSGene124045
GENETestsSPATA33
Target ValidationSPATA33
Huge Navigator SPATA33 [HugePedia]
snp3D : Map Gene to Disease124045
BioCentury BCIQSPATA33
ClinGenSPATA33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124045
Chemical/Pharm GKB GenePA142672262
Clinical trialSPATA33
Miscellaneous
canSAR (ICR)SPATA33 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA33
EVEXSPATA33
GoPubMedSPATA33
iHOPSPATA33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:40:32 CEST 2017

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