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SPATA4 (spermatogenesis associated 4)

Identity

Alias (NCBI)CFAP178
FAP178
SPEF1B
TSARG2
HGNC (Hugo) SPATA4
HGNC Alias symbTSARG2
SPEF1B
FAP178
CFAP178
LocusID (NCBI) 132851
Atlas_Id 43790
Location 4q34.2  [Link to chromosome band 4q34]
Location_base_pair Starts at 176184580 and ends at 176195585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPATA4   17333
Cards
Entrez_Gene (NCBI)SPATA4    spermatogenesis associated 4
AliasesCFAP178; FAP178; SPEF1B; TSARG2
GeneCards (Weizmann)SPATA4
Ensembl hg19 (Hinxton)ENSG00000150628 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150628 [Gene_View]  ENSG00000150628 [Sequence]  chr4:176184580-176195585 [Contig_View]  SPATA4 [Vega]
ICGC DataPortalENSG00000150628
TCGA cBioPortalSPATA4
AceView (NCBI)SPATA4
Genatlas (Paris)SPATA4
SOURCE (Princeton)SPATA4
Genetics Home Reference (NIH)SPATA4
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA4  -     chr4:176184580-176195585 -  4q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA4  -     4q34.2   [Description]    (hg19-Feb_2009)
GoldenPathSPATA4 - 4q34.2 [CytoView hg19]  SPATA4 - 4q34.2 [CytoView hg38]
ImmunoBaseENSG00000150628
Genome Data Viewer NCBISPATA4 [Mapview hg19]  
OMIM609879   
Gene and transcription
Genbank (Entrez)AY040204 BC021731 BC029428 BC039342 HY030172
RefSeq transcript (Entrez)NM_144644
Consensus coding sequences : CCDS (NCBI)SPATA4
Gene ExpressionSPATA4 [ NCBI-GEO ]   SPATA4 [ EBI - ARRAY_EXPRESS ]   SPATA4 [ SEEK ]   SPATA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA4 [ Firebrowse - Broad ]
GenevisibleExpression of SPATA4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132851
GTEX Portal (Tissue expression)SPATA4
Human Protein AtlasENSG00000150628-SPATA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEY3
PhosPhoSitePlusQ8NEY3
Domaine pattern : Prosite (Expaxy)CH (PS50021)   
Domains : Interpro (EBI)CH-domain    CH_2    CH_dom_sf   
Domain families : Pfam (Sanger)CH_2 (PF06294)   
Domain families : Pfam (NCBI)pfam06294   
Conserved Domain (NCBI)SPATA4
SuperfamilyQ8NEY3
AlphaFold pdb e-kbQ8NEY3   
Human Protein Atlas [tissue]ENSG00000150628-SPATA4 [tissue]
HPRD15429
Protein Interaction databases
DIP (DOE-UCLA)Q8NEY3
IntAct (EBI)Q8NEY3
BioGRIDSPATA4
STRING (EMBL)SPATA4
ZODIACSPATA4
Ontologies - Pathways
QuickGOQ8NEY3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  axoneme  microtubule binding  regulation of cytoskeleton organization  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  axoneme  microtubule binding  regulation of cytoskeleton organization  
NDEx NetworkSPATA4
Atlas of Cancer Signalling NetworkSPATA4
Wikipedia pathwaysSPATA4
Orthology - Evolution
OrthoDB132851
GeneTree (enSembl)ENSG00000150628
Phylogenetic Trees/Animal Genes : TreeFamSPATA4
Homologs : HomoloGeneSPATA4
Homology/Alignments : Family Browser (UCSC)SPATA4
Gene fusions - Rearrangements
Fusion : QuiverSPATA4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA4
dbVarSPATA4
ClinVarSPATA4
MonarchSPATA4
1000_GenomesSPATA4 
Exome Variant ServerSPATA4
GNOMAD BrowserENSG00000150628
Varsome BrowserSPATA4
ACMGSPATA4 variants
VarityQ8NEY3
Genomic Variants (DGV)SPATA4 [DGVbeta]
DECIPHERSPATA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA4 
Mutations
ICGC Data PortalSPATA4 
TCGA Data PortalSPATA4 
Broad Tumor PortalSPATA4
OASIS PortalSPATA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPATA4
Mutations and Diseases : HGMDSPATA4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPATA4
DgiDB (Drug Gene Interaction Database)SPATA4
DoCM (Curated mutations)SPATA4
CIViC (Clinical Interpretations of Variants in Cancer)SPATA4
Cancer3DSPATA4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609879   
Orphanet
DisGeNETSPATA4
MedgenSPATA4
Genetic Testing Registry SPATA4
NextProtQ8NEY3 [Medical]
GENETestsSPATA4
Target ValidationSPATA4
Huge Navigator SPATA4 [HugePedia]
ClinGenSPATA4
Clinical trials, drugs, therapy
MyCancerGenomeSPATA4
Protein Interactions : CTDSPATA4
Pharm GKB GenePA38232
PharosQ8NEY3
Clinical trialSPATA4
Miscellaneous
canSAR (ICR)SPATA4
HarmonizomeSPATA4
DataMed IndexSPATA4
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPATA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:49 CEST 2021

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