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SPATA4 (spermatogenesis associated 4)

Identity

Alias_symbol (synonym)TSARG2
SPEF1B
Other alias
HGNC (Hugo) SPATA4
LocusID (NCBI) 132851
Atlas_Id 43790
Location 4q34.2  [Link to chromosome band 4q34]
Location_base_pair Starts at 177105725 and ends at 177116822 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA4   17333
Cards
Entrez_Gene (NCBI)SPATA4  132851  spermatogenesis associated 4
AliasesSPEF1B; TSARG2
GeneCards (Weizmann)SPATA4
Ensembl hg19 (Hinxton)ENSG00000150628 [Gene_View]  chr4:177105725-177116822 [Contig_View]  SPATA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150628 [Gene_View]  chr4:177105725-177116822 [Contig_View]  SPATA4 [Vega]
ICGC DataPortalENSG00000150628
TCGA cBioPortalSPATA4
AceView (NCBI)SPATA4
Genatlas (Paris)SPATA4
WikiGenes132851
SOURCE (Princeton)SPATA4
Genetics Home Reference (NIH)SPATA4
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA4  -     chr4:177105725-177116822 -  4q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA4  -     4q34.2   [Description]    (hg38-Dec_2013)
EnsemblSPATA4 - 4q34.2 [CytoView hg19]  SPATA4 - 4q34.2 [CytoView hg38]
Mapping of homologs : NCBISPATA4 [Mapview hg19]  SPATA4 [Mapview hg38]
OMIM609879   
Gene and transcription
Genbank (Entrez)AY040204 BC021731 BC029428 BC039342 HQ447358
RefSeq transcript (Entrez)NM_144644
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)SPATA4
Cluster EST : UnigeneHs.481235 [ NCBI ]
CGAP (NCI)Hs.481235
Alternative Splicing GalleryENSG00000150628
Gene ExpressionSPATA4 [ NCBI-GEO ]   SPATA4 [ EBI - ARRAY_EXPRESS ]   SPATA4 [ SEEK ]   SPATA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132851
GTEX Portal (Tissue expression)SPATA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEY3
Splice isoforms : SwissVarQ8NEY3
PhosPhoSitePlusQ8NEY3
Domains : Interpro (EBI)CH_2   
Domain families : Pfam (Sanger)CH_2 (PF06294)   
Domain families : Pfam (NCBI)pfam06294   
Conserved Domain (NCBI)SPATA4
DMDM Disease mutations132851
Blocks (Seattle)SPATA4
SuperfamilyQ8NEY3
Human Protein AtlasENSG00000150628
Peptide AtlasQ8NEY3
HPRD15429
IPIIPI00329644   IPI00967978   IPI00967702   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEY3
IntAct (EBI)Q8NEY3
FunCoupENSG00000150628
BioGRIDSPATA4
STRING (EMBL)SPATA4
ZODIACSPATA4
Ontologies - Pathways
QuickGOQ8NEY3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytoplasm  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytoplasm  
NDEx NetworkSPATA4
Atlas of Cancer Signalling NetworkSPATA4
Wikipedia pathwaysSPATA4
Orthology - Evolution
OrthoDB132851
GeneTree (enSembl)ENSG00000150628
Phylogenetic Trees/Animal Genes : TreeFamSPATA4
HOVERGENQ8NEY3
HOGENOMQ8NEY3
Homologs : HomoloGeneSPATA4
Homology/Alignments : Family Browser (UCSC)SPATA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA4
dbVarSPATA4
ClinVarSPATA4
1000_GenomesSPATA4 
Exome Variant ServerSPATA4
ExAC (Exome Aggregation Consortium)SPATA4 (select the gene name)
Genetic variants : HAPMAP132851
Genomic Variants (DGV)SPATA4 [DGVbeta]
DECIPHER (Syndromes)4:177105725-177116822  ENSG00000150628
CONAN: Copy Number AnalysisSPATA4 
Mutations
ICGC Data PortalSPATA4 
TCGA Data PortalSPATA4 
Broad Tumor PortalSPATA4
OASIS PortalSPATA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA4
DgiDB (Drug Gene Interaction Database)SPATA4
DoCM (Curated mutations)SPATA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA4 (select a term)
intoGenSPATA4
Cancer3DSPATA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609879   
Orphanet
MedgenSPATA4
Genetic Testing Registry SPATA4
NextProtQ8NEY3 [Medical]
TSGene132851
GENETestsSPATA4
Huge Navigator SPATA4 [HugePedia]
snp3D : Map Gene to Disease132851
BioCentury BCIQSPATA4
ClinGenSPATA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132851
Chemical/Pharm GKB GenePA38232
Clinical trialSPATA4
Miscellaneous
canSAR (ICR)SPATA4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA4
EVEXSPATA4
GoPubMedSPATA4
iHOPSPATA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:50 CET 2017

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