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SPATA41 (spermatogenesis associated 41 (non-protein coding))

Identity

Alias_symbol (synonym)FLJ42289
HSD47
Other alias
HGNC (Hugo) SPATA41
LocusID (NCBI) 388182
Atlas_Id 74139
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 100344478 and ends at 100349655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA41   48613
Cards
Entrez_Gene (NCBI)SPATA41  388182  spermatogenesis associated 41 (non-protein coding)
AliasesHSD47
GeneCards (Weizmann)SPATA41
Ensembl hg19 (Hinxton)ENSG00000189419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189419 [Gene_View]  chr15:100344478-100349655 [Contig_View]  SPATA41 [Vega]
ICGC DataPortalENSG00000189419
TCGA cBioPortalSPATA41
AceView (NCBI)SPATA41
Genatlas (Paris)SPATA41
WikiGenes388182
SOURCE (Princeton)SPATA41
Genetics Home Reference (NIH)SPATA41
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA41  -     chr15:100344478-100349655 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA41  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA41 - 15q26.3 [CytoView hg19]  SPATA41 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBISPATA41 [Mapview hg19]  SPATA41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057536 AK124283 AY605659 BC028144 BC068097
RefSeq transcript (Entrez)NM_207383
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA41
Cluster EST : UnigeneHs.136982 [ NCBI ]
CGAP (NCI)Hs.136982
Alternative Splicing GalleryENSG00000189419
Gene ExpressionSPATA41 [ NCBI-GEO ]   SPATA41 [ EBI - ARRAY_EXPRESS ]   SPATA41 [ SEEK ]   SPATA41 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388182
GTEX Portal (Tissue expression)SPATA41
Human Protein AtlasENSG00000189419-SPATA41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA41
DMDM Disease mutations388182
Blocks (Seattle)SPATA41
Human Protein Atlas [tissue]ENSG00000189419-SPATA41 [tissue]
HPRD16960
IPIIPI00885165   IPI00983983   
Protein Interaction databases
FunCoupENSG00000189419
BioGRIDSPATA41
STRING (EMBL)SPATA41
ZODIACSPATA41
Ontologies - Pathways
Huge Navigator SPATA41 [HugePedia]
snp3D : Map Gene to Disease388182
BioCentury BCIQSPATA41
ClinGenSPATA41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388182
Clinical trialSPATA41
Miscellaneous
canSAR (ICR)SPATA41 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA41
EVEXSPATA41
GoPubMedSPATA41
iHOPSPATA41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:41 CET 2017

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