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SPATA42 (spermatogenesis associated 42 (non-protein coding))

Identity

Alias_symbol (synonym)SRG7
AKNAD1-AS1
Other alias
HGNC (Hugo) SPATA42
LocusID (NCBI) 642864
Atlas_Id 74140
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108857217 and ends at 108858524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA42   41198
Cards
Entrez_Gene (NCBI)SPATA42  642864  spermatogenesis associated 42 (non-protein coding)
AliasesAKNAD1-AS1; SRG7
GeneCards (Weizmann)SPATA42
Ensembl hg19 (Hinxton)ENSG00000203897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203897 [Gene_View]  chr1:108857217-108858524 [Contig_View]  SPATA42 [Vega]
ICGC DataPortalENSG00000203897
TCGA cBioPortalSPATA42
AceView (NCBI)SPATA42
Genatlas (Paris)SPATA42
WikiGenes642864
SOURCE (Princeton)SPATA42
Genetics Home Reference (NIH)SPATA42
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA42  -     chr1:108857217-108858524 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA42  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA42 - 1p13.3 [CytoView hg19]  SPATA42 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBISPATA42 [Mapview hg19]  SPATA42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA401510 AA401900 AY312144
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA42
Cluster EST : UnigeneHs.372658 [ NCBI ]
CGAP (NCI)Hs.372658
Alternative Splicing GalleryENSG00000203897
Gene ExpressionSPATA42 [ NCBI-GEO ]   SPATA42 [ EBI - ARRAY_EXPRESS ]   SPATA42 [ SEEK ]   SPATA42 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)642864
GTEX Portal (Tissue expression)SPATA42
Human Protein AtlasENSG00000203897-SPATA42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA42
DMDM Disease mutations642864
Blocks (Seattle)SPATA42
Human Protein Atlas [tissue]ENSG00000203897-SPATA42 [tissue]
Protein Interaction databases
FunCoupENSG00000203897
BioGRIDSPATA42
STRING (EMBL)SPATA42
ZODIACSPATA42
Ontologies - Pathways
Huge Navigator SPATA42 [HugePedia]
snp3D : Map Gene to Disease642864
BioCentury BCIQSPATA42
ClinGenSPATA42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642864
Clinical trialSPATA42
Miscellaneous
canSAR (ICR)SPATA42 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA42
EVEXSPATA42
GoPubMedSPATA42
iHOPSPATA42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:41 CET 2017

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