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SPATA45 (spermatogenesis associated 45)

Identity

Alias_namesC1orf227
chromosome 1 open reading frame 227
Alias_symbol (synonym)LOC149643
Other alias
HGNC (Hugo) SPATA45
LocusID (NCBI) 149643
Atlas_Id 74141
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212830143 and ends at 212847649 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA45   33709
Cards
Entrez_Gene (NCBI)SPATA45  149643  spermatogenesis associated 45
AliasesC1orf227
GeneCards (Weizmann)SPATA45
Ensembl hg19 (Hinxton)ENSG00000185523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185523 [Gene_View]  chr1:212830143-212847649 [Contig_View]  SPATA45 [Vega]
ICGC DataPortalENSG00000185523
TCGA cBioPortalSPATA45
AceView (NCBI)SPATA45
Genatlas (Paris)SPATA45
WikiGenes149643
SOURCE (Princeton)SPATA45
Genetics Home Reference (NIH)SPATA45
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA45  -     chr1:212830143-212847649 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA45  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA45 - 1q32.3 [CytoView hg19]  SPATA45 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBISPATA45 [Mapview hg19]  SPATA45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY640234 BC035742
RefSeq transcript (Entrez)NM_001024601
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA45
Cluster EST : UnigeneHs.153274 [ NCBI ]
CGAP (NCI)Hs.153274
Alternative Splicing GalleryENSG00000185523
Gene ExpressionSPATA45 [ NCBI-GEO ]   SPATA45 [ EBI - ARRAY_EXPRESS ]   SPATA45 [ SEEK ]   SPATA45 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149643
GTEX Portal (Tissue expression)SPATA45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ537H7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ537H7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ537H7
Splice isoforms : SwissVarQ537H7
PhosPhoSitePlusQ537H7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA45
DMDM Disease mutations149643
Blocks (Seattle)SPATA45
SuperfamilyQ537H7
Human Protein AtlasENSG00000185523
Peptide AtlasQ537H7
HPRD18558
IPIIPI00085589   
Protein Interaction databases
DIP (DOE-UCLA)Q537H7
IntAct (EBI)Q537H7
FunCoupENSG00000185523
BioGRIDSPATA45
STRING (EMBL)SPATA45
ZODIACSPATA45
Ontologies - Pathways
QuickGOQ537H7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATA45
Atlas of Cancer Signalling NetworkSPATA45
Wikipedia pathwaysSPATA45
Orthology - Evolution
OrthoDB149643
GeneTree (enSembl)ENSG00000185523
Phylogenetic Trees/Animal Genes : TreeFamSPATA45
HOVERGENQ537H7
HOGENOMQ537H7
Homologs : HomoloGeneSPATA45
Homology/Alignments : Family Browser (UCSC)SPATA45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA45
dbVarSPATA45
ClinVarSPATA45
1000_GenomesSPATA45 
Exome Variant ServerSPATA45
ExAC (Exome Aggregation Consortium)SPATA45 (select the gene name)
Genetic variants : HAPMAP149643
Genomic Variants (DGV)SPATA45 [DGVbeta]
DECIPHERSPATA45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA45 
Mutations
ICGC Data PortalSPATA45 
TCGA Data PortalSPATA45 
Broad Tumor PortalSPATA45
OASIS PortalSPATA45 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA45
BioMutasearch SPATA45
DgiDB (Drug Gene Interaction Database)SPATA45
DoCM (Curated mutations)SPATA45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA45 (select a term)
intoGenSPATA45
Cancer3DSPATA45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA45
Genetic Testing Registry SPATA45
NextProtQ537H7 [Medical]
TSGene149643
GENETestsSPATA45
Target ValidationSPATA45
Huge Navigator SPATA45 [HugePedia]
snp3D : Map Gene to Disease149643
BioCentury BCIQSPATA45
ClinGenSPATA45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149643
Chemical/Pharm GKB GenePA164717042
Clinical trialSPATA45
Miscellaneous
canSAR (ICR)SPATA45 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA45
EVEXSPATA45
GoPubMedSPATA45
iHOPSPATA45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:51 CEST 2017

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