Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA46 (spermatogenesis associated 46)

Identity

Other aliasC1orf111
HSD20
HGNC (Hugo) SPATA46
LocusID (NCBI) 284680
Atlas_Id 56727
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 162373725 and ends at 162376854 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA46   27648
Cards
Entrez_Gene (NCBI)SPATA46  284680  spermatogenesis associated 46
AliasesC1orf111; HSD20
GeneCards (Weizmann)SPATA46
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:162373725-162376854 [Contig_View]  SPATA46 [Vega]
TCGA cBioPortalSPATA46
AceView (NCBI)SPATA46
Genatlas (Paris)SPATA46
WikiGenes284680
SOURCE (Princeton)SPATA46
Genetics Home Reference (NIH)SPATA46
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA46  -     chr1:162373725-162376854 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA46  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA46 - 1q23.3 [CytoView hg19]  SPATA46 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBISPATA46 [Mapview hg19]  SPATA46 [Mapview hg38]
OMIM617257   
Gene and transcription
Genbank (Entrez)AY248900 BC032957 HQ448371
RefSeq transcript (Entrez)NM_182581
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA46
Cluster EST : UnigeneHs.97784 [ NCBI ]
CGAP (NCI)Hs.97784
Gene ExpressionSPATA46 [ NCBI-GEO ]   SPATA46 [ EBI - ARRAY_EXPRESS ]   SPATA46 [ SEEK ]   SPATA46 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284680
GTEX Portal (Tissue expression)SPATA46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0L3
Splice isoforms : SwissVarQ5T0L3
PhosPhoSitePlusQ5T0L3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA46
DMDM Disease mutations284680
Blocks (Seattle)SPATA46
SuperfamilyQ5T0L3
Peptide AtlasQ5T0L3
IPIIPI00302311   IPI00844204   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0L3
IntAct (EBI)Q5T0L3
BioGRIDSPATA46
STRING (EMBL)SPATA46
ZODIACSPATA46
Ontologies - Pathways
QuickGOQ5T0L3
Ontology : AmiGOprotein binding  spermatogenesis  fusion of sperm to egg plasma membrane  cell differentiation  nuclear membrane  
Ontology : EGO-EBIprotein binding  spermatogenesis  fusion of sperm to egg plasma membrane  cell differentiation  nuclear membrane  
NDEx NetworkSPATA46
Atlas of Cancer Signalling NetworkSPATA46
Wikipedia pathwaysSPATA46
Orthology - Evolution
OrthoDB284680
Phylogenetic Trees/Animal Genes : TreeFamSPATA46
HOVERGENQ5T0L3
HOGENOMQ5T0L3
Homologs : HomoloGeneSPATA46
Homology/Alignments : Family Browser (UCSC)SPATA46
Gene fusions - Rearrangements
Tumor Fusion PortalSPATA46
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA46
dbVarSPATA46
ClinVarSPATA46
1000_GenomesSPATA46 
Exome Variant ServerSPATA46
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP284680
Genomic Variants (DGV)SPATA46 [DGVbeta]
DECIPHERSPATA46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA46 
Mutations
ICGC Data PortalSPATA46 
TCGA Data PortalSPATA46 
Broad Tumor PortalSPATA46
OASIS PortalSPATA46 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATA46
BioMutasearch SPATA46
DgiDB (Drug Gene Interaction Database)SPATA46
DoCM (Curated mutations)SPATA46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA46 (select a term)
intoGenSPATA46
Cancer3DSPATA46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617257   
Orphanet
DisGeNETSPATA46
MedgenSPATA46
Genetic Testing Registry SPATA46
NextProtQ5T0L3 [Medical]
TSGene284680
GENETestsSPATA46
Target ValidationSPATA46
Huge Navigator SPATA46 [HugePedia]
snp3D : Map Gene to Disease284680
BioCentury BCIQSPATA46
ClinGenSPATA46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284680
Chemical/Pharm GKB GenePA142672495
Clinical trialSPATA46
Miscellaneous
canSAR (ICR)SPATA46 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA46
EVEXSPATA46
GoPubMedSPATA46
iHOPSPATA46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.