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SPATA48 (spermatogenesis associated 48)

Identity

Alias_namesC7orf72
chromosome 7 open reading frame 72
Other alias
HGNC (Hugo) SPATA48
LocusID (NCBI) 100130988
Atlas_Id 78845
Location 7p12.2  [Link to chromosome band 7p12]
Location_base_pair Starts at 50096086 and ends at 50159256 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPATA48   22564
Cards
Entrez_Gene (NCBI)SPATA48  100130988  spermatogenesis associated 48
AliasesC7orf72
GeneCards (Weizmann)SPATA48
Ensembl hg19 (Hinxton)ENSG00000164500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164500 [Gene_View]  chr7:50096086-50159256 [Contig_View]  SPATA48 [Vega]
ICGC DataPortalENSG00000164500
TCGA cBioPortalSPATA48
AceView (NCBI)SPATA48
Genatlas (Paris)SPATA48
WikiGenes100130988
SOURCE (Princeton)SPATA48
Genetics Home Reference (NIH)SPATA48
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA48  -     chr7:50096086-50159256 +  7p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA48  -     7p12.2   [Description]    (hg19-Feb_2009)
EnsemblSPATA48 - 7p12.2 [CytoView hg19]  SPATA48 - 7p12.2 [CytoView hg38]
Mapping of homologs : NCBISPATA48 [Mapview hg19]  SPATA48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI696031 BX092263 DY654485
RefSeq transcript (Entrez)NM_001161834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA48
Cluster EST : UnigeneHs.99248 [ NCBI ]
CGAP (NCI)Hs.99248
Alternative Splicing GalleryENSG00000164500
Gene ExpressionSPATA48 [ NCBI-GEO ]   SPATA48 [ EBI - ARRAY_EXPRESS ]   SPATA48 [ SEEK ]   SPATA48 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130988
GTEX Portal (Tissue expression)SPATA48
Human Protein AtlasENSG00000164500-SPATA48 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA48
DMDM Disease mutations100130988
Blocks (Seattle)SPATA48
Human Protein Atlas [tissue]ENSG00000164500-SPATA48 [tissue]
IPIIPI00887869   
Protein Interaction databases
FunCoupENSG00000164500
BioGRIDSPATA48
STRING (EMBL)SPATA48
ZODIACSPATA48
Ontologies - Pathways
Huge Navigator SPATA48 [HugePedia]
snp3D : Map Gene to Disease100130988
BioCentury BCIQSPATA48
ClinGenSPATA48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130988
Chemical/Pharm GKB GenePA165617678
Clinical trialSPATA48
Miscellaneous
canSAR (ICR)SPATA48 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA48
EVEXSPATA48
GoPubMedSPATA48
iHOPSPATA48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:16 CET 2017

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