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SPATA5L1 (spermatogenesis associated 5 like 1)

Identity

Alias_symbol (synonym)MGC5347
FLJ12286
Other alias-
HGNC (Hugo) SPATA5L1
LocusID (NCBI) 79029
Atlas_Id 74143
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45402321 and ends at 45415905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GABPB1 (15q21.2) / SPATA5L1 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA5L1   28762
Cards
Entrez_Gene (NCBI)SPATA5L1  79029  spermatogenesis associated 5 like 1
Aliases
GeneCards (Weizmann)SPATA5L1
Ensembl hg19 (Hinxton)ENSG00000171763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171763 [Gene_View]  chr15:45402321-45415905 [Contig_View]  SPATA5L1 [Vega]
ICGC DataPortalENSG00000171763
TCGA cBioPortalSPATA5L1
AceView (NCBI)SPATA5L1
Genatlas (Paris)SPATA5L1
WikiGenes79029
SOURCE (Princeton)SPATA5L1
Genetics Home Reference (NIH)SPATA5L1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA5L1  -     chr15:45402321-45415905 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA5L1  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSPATA5L1 - 15q21.1 [CytoView hg19]  SPATA5L1 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISPATA5L1 [Mapview hg19]  SPATA5L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA451905 AF086107 AK022348 AK023232 AK225463
RefSeq transcript (Entrez)NM_001323640 NM_024063
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA5L1
Cluster EST : UnigeneHs.369657 [ NCBI ]
CGAP (NCI)Hs.369657
Alternative Splicing GalleryENSG00000171763
Gene ExpressionSPATA5L1 [ NCBI-GEO ]   SPATA5L1 [ EBI - ARRAY_EXPRESS ]   SPATA5L1 [ SEEK ]   SPATA5L1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA5L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79029
GTEX Portal (Tissue expression)SPATA5L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVQ7
Splice isoforms : SwissVarQ9BVQ7
PhosPhoSitePlusQ9BVQ7
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)SPATA5L1
DMDM Disease mutations79029
Blocks (Seattle)SPATA5L1
SuperfamilyQ9BVQ7
Human Protein AtlasENSG00000171763
Peptide AtlasQ9BVQ7
HPRD11596
IPIIPI00031608   IPI00890778   IPI00386906   IPI01012737   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVQ7
IntAct (EBI)Q9BVQ7
FunCoupENSG00000171763
BioGRIDSPATA5L1
STRING (EMBL)SPATA5L1
ZODIACSPATA5L1
Ontologies - Pathways
QuickGOQ9BVQ7
Ontology : AmiGOATP binding  cytoplasm  
Ontology : EGO-EBIATP binding  cytoplasm  
NDEx NetworkSPATA5L1
Atlas of Cancer Signalling NetworkSPATA5L1
Wikipedia pathwaysSPATA5L1
Orthology - Evolution
OrthoDB79029
GeneTree (enSembl)ENSG00000171763
Phylogenetic Trees/Animal Genes : TreeFamSPATA5L1
HOVERGENQ9BVQ7
HOGENOMQ9BVQ7
Homologs : HomoloGeneSPATA5L1
Homology/Alignments : Family Browser (UCSC)SPATA5L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA5L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA5L1
dbVarSPATA5L1
ClinVarSPATA5L1
1000_GenomesSPATA5L1 
Exome Variant ServerSPATA5L1
ExAC (Exome Aggregation Consortium)SPATA5L1 (select the gene name)
Genetic variants : HAPMAP79029
Genomic Variants (DGV)SPATA5L1 [DGVbeta]
DECIPHERSPATA5L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA5L1 
Mutations
ICGC Data PortalSPATA5L1 
TCGA Data PortalSPATA5L1 
Broad Tumor PortalSPATA5L1
OASIS PortalSPATA5L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA5L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA5L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA5L1
DgiDB (Drug Gene Interaction Database)SPATA5L1
DoCM (Curated mutations)SPATA5L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA5L1 (select a term)
intoGenSPATA5L1
Cancer3DSPATA5L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA5L1
Genetic Testing Registry SPATA5L1
NextProtQ9BVQ7 [Medical]
TSGene79029
GENETestsSPATA5L1
Target ValidationSPATA5L1
Huge Navigator SPATA5L1 [HugePedia]
snp3D : Map Gene to Disease79029
BioCentury BCIQSPATA5L1
ClinGenSPATA5L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79029
Chemical/Pharm GKB GenePA134923477
Clinical trialSPATA5L1
Miscellaneous
canSAR (ICR)SPATA5L1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA5L1
EVEXSPATA5L1
GoPubMedSPATA5L1
iHOPSPATA5L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:51 CEST 2017

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