Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA6 (spermatogenesis associated 6)

Identity

Alias_symbol (synonym)SRF1
FLJ10007
SRF-1
Other aliasHASH
HGNC (Hugo) SPATA6
LocusID (NCBI) 54558
Atlas_Id 54659
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 48761044 and ends at 48937880 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PIGK (1p31.1) / SPATA6 (1p33)SPATA6 (1p33) / BEND5 (1p33)SPATA6 (1p33) / CRYZ (1p31.1)
SPATA6 (1p33) / MAD2L2 (1p36.22)SPATA6 1p33 / BEND5 1p33SPATA6 1p33 / CRYZ 1p31.1
SPATA6 1p33 / MAD2L2 1p36.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA6   18309
Cards
Entrez_Gene (NCBI)SPATA6  54558  spermatogenesis associated 6
AliasesHASH; SRF-1; SRF1
GeneCards (Weizmann)SPATA6
Ensembl hg19 (Hinxton)ENSG00000132122 [Gene_View]  chr1:48761044-48937880 [Contig_View]  SPATA6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132122 [Gene_View]  chr1:48761044-48937880 [Contig_View]  SPATA6 [Vega]
ICGC DataPortalENSG00000132122
TCGA cBioPortalSPATA6
AceView (NCBI)SPATA6
Genatlas (Paris)SPATA6
WikiGenes54558
SOURCE (Princeton)SPATA6
Genetics Home Reference (NIH)SPATA6
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA6  -     chr1:48761044-48937880 -  1p33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA6  -     1p33   [Description]    (hg38-Dec_2013)
EnsemblSPATA6 - 1p33 [CytoView hg19]  SPATA6 - 1p33 [CytoView hg38]
Mapping of homologs : NCBISPATA6 [Mapview hg19]  SPATA6 [Mapview hg38]
OMIM613947   
Gene and transcription
Genbank (Entrez)AK000869 AK301770 BC020660 BC040655 DB025426
RefSeq transcript (Entrez)NM_001286238 NM_001286239 NM_019073
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SPATA6
Cluster EST : UnigeneHs.538103 [ NCBI ]
CGAP (NCI)Hs.538103
Alternative Splicing GalleryENSG00000132122
Gene ExpressionSPATA6 [ NCBI-GEO ]   SPATA6 [ EBI - ARRAY_EXPRESS ]   SPATA6 [ SEEK ]   SPATA6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54558
GTEX Portal (Tissue expression)SPATA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWH7
Splice isoforms : SwissVarQ9NWH7
PhosPhoSitePlusQ9NWH7
Domains : Interpro (EBI)Spata6    SPATA6_N   
Domain families : Pfam (Sanger)SPATA6 (PF14909)   
Domain families : Pfam (NCBI)pfam14909   
Conserved Domain (NCBI)SPATA6
DMDM Disease mutations54558
Blocks (Seattle)SPATA6
SuperfamilyQ9NWH7
Human Protein AtlasENSG00000132122
Peptide AtlasQ9NWH7
HPRD15430
IPIIPI00005135   IPI00645879   IPI01018694   IPI00645631   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWH7
IntAct (EBI)Q9NWH7
FunCoupENSG00000132122
BioGRIDSPATA6
STRING (EMBL)SPATA6
ZODIACSPATA6
Ontologies - Pathways
QuickGOQ9NWH7
Ontology : AmiGOextracellular region  multicellular organism development  spermatogenesis  cell differentiation  myosin light chain binding  motile cilium assembly  sperm connecting piece  
Ontology : EGO-EBIextracellular region  multicellular organism development  spermatogenesis  cell differentiation  myosin light chain binding  motile cilium assembly  sperm connecting piece  
NDEx NetworkSPATA6
Atlas of Cancer Signalling NetworkSPATA6
Wikipedia pathwaysSPATA6
Orthology - Evolution
OrthoDB54558
GeneTree (enSembl)ENSG00000132122
Phylogenetic Trees/Animal Genes : TreeFamSPATA6
HOVERGENQ9NWH7
HOGENOMQ9NWH7
Homologs : HomoloGeneSPATA6
Homology/Alignments : Family Browser (UCSC)SPATA6
Gene fusions - Rearrangements
Fusion : MitelmanPIGK/SPATA6 [1p31.1/1p33]  [t(1;1)(p31;p33)]  
Fusion : MitelmanSPATA6/CRYZ [1p33/1p31.1]  [t(1;1)(p31;p33)]  
Fusion : MitelmanSPATA6/MAD2L2 [1p33/1p36.22]  [t(1;1)(p33;p36)]  
Fusion: TCGASPATA6 1p33 BEND5 1p33 LUAD
Fusion: TCGASPATA6 1p33 CRYZ 1p31.1 SKCM
Fusion: TCGASPATA6 1p33 MAD2L2 1p36.22 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA6
dbVarSPATA6
ClinVarSPATA6
1000_GenomesSPATA6 
Exome Variant ServerSPATA6
ExAC (Exome Aggregation Consortium)SPATA6 (select the gene name)
Genetic variants : HAPMAP54558
Genomic Variants (DGV)SPATA6 [DGVbeta]
DECIPHER (Syndromes)1:48761044-48937880  ENSG00000132122
CONAN: Copy Number AnalysisSPATA6 
Mutations
ICGC Data PortalSPATA6 
TCGA Data PortalSPATA6 
Broad Tumor PortalSPATA6
OASIS PortalSPATA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA6
DgiDB (Drug Gene Interaction Database)SPATA6
DoCM (Curated mutations)SPATA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA6 (select a term)
intoGenSPATA6
Cancer3DSPATA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613947   
Orphanet
MedgenSPATA6
Genetic Testing Registry SPATA6
NextProtQ9NWH7 [Medical]
TSGene54558
GENETestsSPATA6
Huge Navigator SPATA6 [HugePedia]
snp3D : Map Gene to Disease54558
BioCentury BCIQSPATA6
ClinGenSPATA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54558
Chemical/Pharm GKB GenePA38312
Clinical trialSPATA6
Miscellaneous
canSAR (ICR)SPATA6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA6
EVEXSPATA6
GoPubMedSPATA6
iHOPSPATA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:28:50 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.