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SPATA6L (spermatogenesis associated 6 like)

Identity

Alias_namesC9orf68
chromosome 9 open reading frame 68
Alias_symbol (synonym)FLJ10058
Other aliasbA6J24.2
HGNC (Hugo) SPATA6L
LocusID (NCBI) 55064
Atlas_Id 74144
Location 9p24.2  [Link to chromosome band 9p24]
Location_base_pair Starts at 4598316 and ends at 4666674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALDH1L1 (3q21.3) / SPATA6L (9p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA6L   25472
Cards
Entrez_Gene (NCBI)SPATA6L  55064  spermatogenesis associated 6 like
AliasesC9orf68; bA6J24.2
GeneCards (Weizmann)SPATA6L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:4598316-4666674 [Contig_View]  SPATA6L [Vega]
TCGA cBioPortalSPATA6L
AceView (NCBI)SPATA6L
Genatlas (Paris)SPATA6L
WikiGenes55064
SOURCE (Princeton)SPATA6L
Genetics Home Reference (NIH)SPATA6L
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA6L  -     chr9:4598316-4666674 -  9p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA6L  -     9p24.2   [Description]    (hg19-Feb_2009)
EnsemblSPATA6L - 9p24.2 [CytoView hg19]  SPATA6L - 9p24.2 [CytoView hg38]
Mapping of homologs : NCBISPATA6L [Mapview hg19]  SPATA6L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI680014 AK000920 AK295831 AK301790 BC034293
RefSeq transcript (Entrez)NM_001039395 NM_017985
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA6L
Cluster EST : UnigeneHs.179615 [ NCBI ]
CGAP (NCI)Hs.179615
Gene ExpressionSPATA6L [ NCBI-GEO ]   SPATA6L [ EBI - ARRAY_EXPRESS ]   SPATA6L [ SEEK ]   SPATA6L [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA6L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55064
GTEX Portal (Tissue expression)SPATA6L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4H0
Splice isoforms : SwissVarQ8N4H0
PhosPhoSitePlusQ8N4H0
Domains : Interpro (EBI)SPATA6_N    SPATA6L   
Domain families : Pfam (Sanger)SPATA6 (PF14909)   
Domain families : Pfam (NCBI)pfam14909   
Conserved Domain (NCBI)SPATA6L
DMDM Disease mutations55064
Blocks (Seattle)SPATA6L
SuperfamilyQ8N4H0
Peptide AtlasQ8N4H0
HPRD12973
IPIIPI00296670   IPI00332373   IPI00642034   IPI00908724   IPI00946893   IPI00017470   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4H0
IntAct (EBI)Q8N4H0
BioGRIDSPATA6L
STRING (EMBL)SPATA6L
ZODIACSPATA6L
Ontologies - Pathways
QuickGOQ8N4H0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATA6L
Atlas of Cancer Signalling NetworkSPATA6L
Wikipedia pathwaysSPATA6L
Orthology - Evolution
OrthoDB55064
Phylogenetic Trees/Animal Genes : TreeFamSPATA6L
HOVERGENQ8N4H0
HOGENOMQ8N4H0
Homologs : HomoloGeneSPATA6L
Homology/Alignments : Family Browser (UCSC)SPATA6L
Gene fusions - Rearrangements
Fusion: Tumor Portal SPATA6L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA6L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA6L
dbVarSPATA6L
ClinVarSPATA6L
1000_GenomesSPATA6L 
Exome Variant ServerSPATA6L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55064
Genomic Variants (DGV)SPATA6L [DGVbeta]
DECIPHERSPATA6L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA6L 
Mutations
ICGC Data PortalSPATA6L 
TCGA Data PortalSPATA6L 
Broad Tumor PortalSPATA6L
OASIS PortalSPATA6L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA6L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA6L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA6L
DgiDB (Drug Gene Interaction Database)SPATA6L
DoCM (Curated mutations)SPATA6L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA6L (select a term)
intoGenSPATA6L
Cancer3DSPATA6L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPATA6L
Genetic Testing Registry SPATA6L
NextProtQ8N4H0 [Medical]
TSGene55064
GENETestsSPATA6L
Target ValidationSPATA6L
Huge Navigator SPATA6L [HugePedia]
snp3D : Map Gene to Disease55064
BioCentury BCIQSPATA6L
ClinGenSPATA6L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55064
Chemical/Pharm GKB GenePA134880636
Clinical trialSPATA6L
Miscellaneous
canSAR (ICR)SPATA6L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA6L
EVEXSPATA6L
GoPubMedSPATA6L
iHOPSPATA6L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:42 CET 2017

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