Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPATA7 (spermatogenesis associated 7)

Identity

Other namesHSD-3.1
HSD3
LCA3
HGNC (Hugo) SPATA7
LocusID (NCBI) 55812
Location 14q31.3
Location_base_pair Starts at 88851988 and ends at 88904804 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SPATA7   20423
Cards
Entrez_Gene (NCBI)SPATA7  55812  spermatogenesis associated 7
GeneCards (Weizmann)SPATA7
Ensembl (Hinxton)ENSG00000042317 [Gene_View]  chr14:88851988-88904804 [Contig_View]  SPATA7 [Vega]
ICGC DataPortalENSG00000042317
cBioPortalSPATA7
AceView (NCBI)SPATA7
Genatlas (Paris)SPATA7
WikiGenes55812
SOURCE (Princeton)NM_001040428 NM_018418
Genomic and cartography
GoldenPath (UCSC)SPATA7  -  14q31.3   chr14:88851988-88904804 +  14q31.3   [Description]    (hg19-Feb_2009)
EnsemblSPATA7 - 14q31.3 [CytoView]
Mapping of homologs : NCBISPATA7 [Mapview]
OMIM268000   604232   609868   
Gene and transcription
Genbank (Entrez)AF144487 AF144488 AK055864 AK225746 AK290631
RefSeq transcript (Entrez)NM_001040428 NM_018418
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NG_021183 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)SPATA7
Cluster EST : UnigeneHs.525518 [ NCBI ]
CGAP (NCI)Hs.525518
Alternative Splicing : Fast-db (Paris)GSHG0009039
Alternative Splicing GalleryENSG00000042317
Gene ExpressionSPATA7 [ NCBI-GEO ]     SPATA7 [ SEEK ]   SPATA7 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0W8 (Uniprot)
NextProtQ9P0W8  [Medical]
With graphics : InterProQ9P0W8
Splice isoforms : SwissVarQ9P0W8 (Swissvar)
Related proteins : CluSTrQ9P0W8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations55812
Blocks (Seattle)Q9P0W8
Human Protein AtlasENSG00000042317 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9P0W8
HPRD15431
IPIIPI00414240   IPI00376956   IPI00376957   IPI00876977   IPI01025511   IPI01025961   IPI01025401   IPI01026176   IPI01026276   IPI01026488   IPI01024831   IPI01025184   IPI01024826   IPI01025523   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0W8
IntAct (EBI)Q9P0W8
FunCoupENSG00000042317
BioGRIDSPATA7
InParanoidQ9P0W8
Interologous Interaction database Q9P0W8
IntegromeDBSPATA7
STRING (EMBL)SPATA7
Ontologies - Pathways
Ontology : AmiGOvisual perception  response to stimulus  
Ontology : EGO-EBIvisual perception  response to stimulus  
Protein Interaction DatabaseSPATA7
Wikipedia pathwaysSPATA7
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SPATA7
snp3D : Map Gene to Disease55812
SNP (GeneSNP Utah)SPATA7
SNP : HGBaseSPATA7
Genetic variants : HAPMAPSPATA7
Exome VariantSPATA7
1000_GenomesSPATA7 
ICGC programENSG00000042317 
Somatic Mutations in Cancer : COSMICSPATA7 
CONAN: Copy Number AnalysisSPATA7 
Mutations and Diseases : HGMDSPATA7
Genomic VariantsSPATA7  SPATA7 [DGVbeta]
dbVarSPATA7
ClinVarSPATA7
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM268000    604232    609868   
MedgenSPATA7
GENETestsSPATA7
Disease Genetic AssociationSPATA7
Huge Navigator SPATA7 [HugePedia]  SPATA7 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSPATA7
Homology/Alignments : Family Browser (UCSC)SPATA7
Phylogenetic Trees/Animal Genes : TreeFamSPATA7
Chemical/Protein Interactions : CTD55812
Chemical/Pharm GKB GenePA134907300
Clinical trialSPATA7
Cancer Resource (Charite)ENSG00000042317
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineSPATA7
iHOPSPATA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:20:42 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.