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SPATA8 (spermatogenesis associated 8)

Identity

Alias_symbol (synonym)MGC44294
Other aliasSRG8
HGNC (Hugo) SPATA8
LocusID (NCBI) 145946
Atlas_Id 74145
Location 15q26.2  [Link to chromosome band 15q26]
Location_base_pair Starts at 97326637 and ends at 97328845 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPATA8 (15q26.2) / PDE3B (11p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA8   28676
Cards
Entrez_Gene (NCBI)SPATA8  145946  spermatogenesis associated 8
AliasesSRG8
GeneCards (Weizmann)SPATA8
Ensembl hg19 (Hinxton)ENSG00000185594 [Gene_View]  chr15:97326637-97328845 [Contig_View]  SPATA8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185594 [Gene_View]  chr15:97326637-97328845 [Contig_View]  SPATA8 [Vega]
ICGC DataPortalENSG00000185594
TCGA cBioPortalSPATA8
AceView (NCBI)SPATA8
Genatlas (Paris)SPATA8
WikiGenes145946
SOURCE (Princeton)SPATA8
Genetics Home Reference (NIH)SPATA8
Genomic and cartography
GoldenPath hg19 (UCSC)SPATA8  -     chr15:97326637-97328845 +  15q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATA8  -     15q26.2   [Description]    (hg38-Dec_2013)
EnsemblSPATA8 - 15q26.2 [CytoView hg19]  SPATA8 - 15q26.2 [CytoView hg38]
Mapping of homologs : NCBISPATA8 [Mapview hg19]  SPATA8 [Mapview hg38]
OMIM613948   
Gene and transcription
Genbank (Entrez)AY489187 BC033979 BC066292 BC112390 HQ257962
RefSeq transcript (Entrez)NM_001304804 NM_001304805 NM_001304806 NM_173499
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)SPATA8
Cluster EST : UnigeneHs.326528 [ NCBI ]
CGAP (NCI)Hs.326528
Alternative Splicing GalleryENSG00000185594
Gene ExpressionSPATA8 [ NCBI-GEO ]   SPATA8 [ EBI - ARRAY_EXPRESS ]   SPATA8 [ SEEK ]   SPATA8 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145946
GTEX Portal (Tissue expression)SPATA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6RVD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6RVD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6RVD6
Splice isoforms : SwissVarQ6RVD6
PhosPhoSitePlusQ6RVD6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPATA8
DMDM Disease mutations145946
Blocks (Seattle)SPATA8
SuperfamilyQ6RVD6
Human Protein AtlasENSG00000185594
Peptide AtlasQ6RVD6
HPRD15432
IPIIPI00168637   IPI00827587   
Protein Interaction databases
DIP (DOE-UCLA)Q6RVD6
IntAct (EBI)Q6RVD6
FunCoupENSG00000185594
BioGRIDSPATA8
STRING (EMBL)SPATA8
ZODIACSPATA8
Ontologies - Pathways
QuickGOQ6RVD6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSPATA8
Atlas of Cancer Signalling NetworkSPATA8
Wikipedia pathwaysSPATA8
Orthology - Evolution
OrthoDB145946
GeneTree (enSembl)ENSG00000185594
Phylogenetic Trees/Animal Genes : TreeFamSPATA8
HOVERGENQ6RVD6
HOGENOMQ6RVD6
Homologs : HomoloGeneSPATA8
Homology/Alignments : Family Browser (UCSC)SPATA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA8
dbVarSPATA8
ClinVarSPATA8
1000_GenomesSPATA8 
Exome Variant ServerSPATA8
ExAC (Exome Aggregation Consortium)SPATA8 (select the gene name)
Genetic variants : HAPMAP145946
Genomic Variants (DGV)SPATA8 [DGVbeta]
DECIPHER (Syndromes)15:97326637-97328845  ENSG00000185594
CONAN: Copy Number AnalysisSPATA8 
Mutations
ICGC Data PortalSPATA8 
TCGA Data PortalSPATA8 
Broad Tumor PortalSPATA8
OASIS PortalSPATA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA8
DgiDB (Drug Gene Interaction Database)SPATA8
DoCM (Curated mutations)SPATA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA8 (select a term)
intoGenSPATA8
Cancer3DSPATA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613948   
Orphanet
MedgenSPATA8
Genetic Testing Registry SPATA8
NextProtQ6RVD6 [Medical]
TSGene145946
GENETestsSPATA8
Huge Navigator SPATA8 [HugePedia]
snp3D : Map Gene to Disease145946
BioCentury BCIQSPATA8
ClinGenSPATA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145946
Chemical/Pharm GKB GenePA134977227
Clinical trialSPATA8
Miscellaneous
canSAR (ICR)SPATA8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA8
EVEXSPATA8
GoPubMedSPATA8
iHOPSPATA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:23 CET 2017

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