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SPATA9 (spermatogenesis associated 9)

Identity

Alias_symbol (synonym)NYD-SP16
FLJ35906
Other alias
HGNC (Hugo) SPATA9
LocusID (NCBI) 83890
Atlas_Id 74147
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 95658316 and ends at 95731846 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATA9   22988
Cards
Entrez_Gene (NCBI)SPATA9  83890  spermatogenesis associated 9
AliasesNYD-SP16
GeneCards (Weizmann)SPATA9
Ensembl hg19 (Hinxton)ENSG00000145757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145757 [Gene_View]  chr5:95658316-95731846 [Contig_View]  SPATA9 [Vega]
ICGC DataPortalENSG00000145757
TCGA cBioPortalSPATA9
AceView (NCBI)SPATA9
Genatlas (Paris)SPATA9
WikiGenes83890
SOURCE (Princeton)SPATA9
Genetics Home Reference (NIH)SPATA9
Genomic and cartography
GoldenPath hg38 (UCSC)SPATA9  -     chr5:95658316-95731846 -  5q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATA9  -     5q15   [Description]    (hg19-Feb_2009)
EnsemblSPATA9 - 5q15 [CytoView hg19]  SPATA9 - 5q15 [CytoView hg38]
Mapping of homologs : NCBISPATA9 [Mapview hg19]  SPATA9 [Mapview hg38]
OMIM608039   
Gene and transcription
Genbank (Entrez)AK093225 AK292338 AK310260 AY027526 BC032832
RefSeq transcript (Entrez)NM_001349303 NM_031952 NM_173361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATA9
Cluster EST : UnigeneHs.50499 [ NCBI ]
CGAP (NCI)Hs.50499
Alternative Splicing GalleryENSG00000145757
Gene ExpressionSPATA9 [ NCBI-GEO ]   SPATA9 [ EBI - ARRAY_EXPRESS ]   SPATA9 [ SEEK ]   SPATA9 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83890
GTEX Portal (Tissue expression)SPATA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWV2
Splice isoforms : SwissVarQ9BWV2
PhosPhoSitePlusQ9BWV2
Domains : Interpro (EBI)SPATA9   
Domain families : Pfam (Sanger)SPATA9 (PF15824)   
Domain families : Pfam (NCBI)pfam15824   
Conserved Domain (NCBI)SPATA9
DMDM Disease mutations83890
Blocks (Seattle)SPATA9
SuperfamilyQ9BWV2
Human Protein AtlasENSG00000145757
Peptide AtlasQ9BWV2
HPRD12155
IPIIPI00011196   IPI00300396   IPI00827567   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWV2
IntAct (EBI)Q9BWV2
FunCoupENSG00000145757
BioGRIDSPATA9
STRING (EMBL)SPATA9
ZODIACSPATA9
Ontologies - Pathways
QuickGOQ9BWV2
Ontology : AmiGOmulticellular organism development  spermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBImulticellular organism development  spermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkSPATA9
Atlas of Cancer Signalling NetworkSPATA9
Wikipedia pathwaysSPATA9
Orthology - Evolution
OrthoDB83890
GeneTree (enSembl)ENSG00000145757
Phylogenetic Trees/Animal Genes : TreeFamSPATA9
HOVERGENQ9BWV2
HOGENOMQ9BWV2
Homologs : HomoloGeneSPATA9
Homology/Alignments : Family Browser (UCSC)SPATA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATA9
dbVarSPATA9
ClinVarSPATA9
1000_GenomesSPATA9 
Exome Variant ServerSPATA9
ExAC (Exome Aggregation Consortium)SPATA9 (select the gene name)
Genetic variants : HAPMAP83890
Genomic Variants (DGV)SPATA9 [DGVbeta]
DECIPHERSPATA9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATA9 
Mutations
ICGC Data PortalSPATA9 
TCGA Data PortalSPATA9 
Broad Tumor PortalSPATA9
OASIS PortalSPATA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATA9
DgiDB (Drug Gene Interaction Database)SPATA9
DoCM (Curated mutations)SPATA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATA9 (select a term)
intoGenSPATA9
Cancer3DSPATA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608039   
Orphanet
MedgenSPATA9
Genetic Testing Registry SPATA9
NextProtQ9BWV2 [Medical]
TSGene83890
GENETestsSPATA9
Target ValidationSPATA9
Huge Navigator SPATA9 [HugePedia]
snp3D : Map Gene to Disease83890
BioCentury BCIQSPATA9
ClinGenSPATA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83890
Chemical/Pharm GKB GenePA134900368
Clinical trialSPATA9
Miscellaneous
canSAR (ICR)SPATA9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATA9
EVEXSPATA9
GoPubMedSPATA9
iHOPSPATA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:52 CEST 2017

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