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SPATC1 (spermatogenesis and centriole associated 1)

Identity

Alias_symbol (synonym)MGC61633
SPATA15
SPERIOLIN
Other alias
HGNC (Hugo) SPATC1
LocusID (NCBI) 375686
Atlas_Id 74148
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144012414 and ends at 144047114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATC1   30510
Cards
Entrez_Gene (NCBI)SPATC1  375686  spermatogenesis and centriole associated 1
AliasesSPATA15
GeneCards (Weizmann)SPATC1
Ensembl hg19 (Hinxton)ENSG00000186583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186583 [Gene_View]  chr8:144012414-144047114 [Contig_View]  SPATC1 [Vega]
ICGC DataPortalENSG00000186583
TCGA cBioPortalSPATC1
AceView (NCBI)SPATC1
Genatlas (Paris)SPATC1
WikiGenes375686
SOURCE (Princeton)SPATC1
Genetics Home Reference (NIH)SPATC1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATC1  -     chr8:144012414-144047114 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATC1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblSPATC1 - 8q24.3 [CytoView hg19]  SPATC1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISPATC1 [Mapview hg19]  SPATC1 [Mapview hg38]
OMIM610874   
Gene and transcription
Genbank (Entrez)AB092352 AK301710 BC050390 BC053547 DB052198
RefSeq transcript (Entrez)NM_001134374 NM_198572
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATC1
Cluster EST : UnigeneHs.97726 [ NCBI ]
CGAP (NCI)Hs.97726
Alternative Splicing GalleryENSG00000186583
Gene ExpressionSPATC1 [ NCBI-GEO ]   SPATC1 [ EBI - ARRAY_EXPRESS ]   SPATC1 [ SEEK ]   SPATC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375686
GTEX Portal (Tissue expression)SPATC1
Human Protein AtlasENSG00000186583-SPATC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76KD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76KD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76KD6
Splice isoforms : SwissVarQ76KD6
PhosPhoSitePlusQ76KD6
Domains : Interpro (EBI)SPATC1    Speriolin_C    Speriolin_N   
Domain families : Pfam (Sanger)Speriolin_C (PF15059)    Speriolin_N (PF15058)   
Domain families : Pfam (NCBI)pfam15059    pfam15058   
Conserved Domain (NCBI)SPATC1
DMDM Disease mutations375686
Blocks (Seattle)SPATC1
SuperfamilyQ76KD6
Human Protein Atlas [tissue]ENSG00000186583-SPATC1 [tissue]
Peptide AtlasQ76KD6
HPRD15433
IPIIPI00419392   IPI00910083   
Protein Interaction databases
DIP (DOE-UCLA)Q76KD6
IntAct (EBI)Q76KD6
FunCoupENSG00000186583
BioGRIDSPATC1
STRING (EMBL)SPATC1
ZODIACSPATC1
Ontologies - Pathways
QuickGOQ76KD6
Ontology : AmiGOcytoplasm  centrosome  
Ontology : EGO-EBIcytoplasm  centrosome  
NDEx NetworkSPATC1
Atlas of Cancer Signalling NetworkSPATC1
Wikipedia pathwaysSPATC1
Orthology - Evolution
OrthoDB375686
GeneTree (enSembl)ENSG00000186583
Phylogenetic Trees/Animal Genes : TreeFamSPATC1
HOVERGENQ76KD6
HOGENOMQ76KD6
Homologs : HomoloGeneSPATC1
Homology/Alignments : Family Browser (UCSC)SPATC1
Gene fusions - Rearrangements
Tumor Fusion PortalSPATC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATC1
dbVarSPATC1
ClinVarSPATC1
1000_GenomesSPATC1 
Exome Variant ServerSPATC1
ExAC (Exome Aggregation Consortium)ENSG00000186583
GNOMAD BrowserENSG00000186583
Genetic variants : HAPMAP375686
Genomic Variants (DGV)SPATC1 [DGVbeta]
DECIPHERSPATC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATC1 
Mutations
ICGC Data PortalSPATC1 
TCGA Data PortalSPATC1 
Broad Tumor PortalSPATC1
OASIS PortalSPATC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATC1
DgiDB (Drug Gene Interaction Database)SPATC1
DoCM (Curated mutations)SPATC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATC1 (select a term)
intoGenSPATC1
Cancer3DSPATC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610874   
Orphanet
DisGeNETSPATC1
MedgenSPATC1
Genetic Testing Registry SPATC1
NextProtQ76KD6 [Medical]
TSGene375686
GENETestsSPATC1
Target ValidationSPATC1
Huge Navigator SPATC1 [HugePedia]
snp3D : Map Gene to Disease375686
BioCentury BCIQSPATC1
CLinFenSPATC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375686
Chemical/Pharm GKB GenePA134907641
Clinical trialSPATC1
Miscellaneous
canSAR (ICR)SPATC1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATC1
EVEXSPATC1
GoPubMedSPATC1
iHOPSPATC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:03 CET 2017

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