Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPATC1L (spermatogenesis and centriole associated 1-like)

Identity

Alias_namesC21orf56
chromosome 21 open reading frame 56
Other alias
HGNC (Hugo) SPATC1L
LocusID (NCBI) 84221
Atlas_Id 74149
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 47581062 and ends at 47604373 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPATC1L (21q22.3) / FTCD (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATC1L   1298
Cards
Entrez_Gene (NCBI)SPATC1L  84221  spermatogenesis and centriole associated 1-like
AliasesC21orf56
GeneCards (Weizmann)SPATC1L
Ensembl hg19 (Hinxton)ENSG00000160284 [Gene_View]  chr21:47581062-47604373 [Contig_View]  SPATC1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000160284 [Gene_View]  chr21:47581062-47604373 [Contig_View]  SPATC1L [Vega]
ICGC DataPortalENSG00000160284
TCGA cBioPortalSPATC1L
AceView (NCBI)SPATC1L
Genatlas (Paris)SPATC1L
WikiGenes84221
SOURCE (Princeton)SPATC1L
Genetics Home Reference (NIH)SPATC1L
Genomic and cartography
GoldenPath hg19 (UCSC)SPATC1L  -     chr21:47581062-47604373 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPATC1L  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblSPATC1L - 21q22.3 [CytoView hg19]  SPATC1L - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBISPATC1L [Mapview hg19]  SPATC1L [Mapview hg38]
OMIM612412   
Gene and transcription
Genbank (Entrez)AK304535 AK309847 AL136871 AM393702 AM393719
RefSeq transcript (Entrez)NM_001142854 NM_032261
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NT_187626 NW_004929427
Consensus coding sequences : CCDS (NCBI)SPATC1L
Cluster EST : UnigeneHs.381214 [ NCBI ]
CGAP (NCI)Hs.381214
Alternative Splicing GalleryENSG00000160284
Gene ExpressionSPATC1L [ NCBI-GEO ]   SPATC1L [ EBI - ARRAY_EXPRESS ]   SPATC1L [ SEEK ]   SPATC1L [ MEM ]
Gene Expression Viewer (FireBrowse)SPATC1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84221
GTEX Portal (Tissue expression)SPATC1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0A9
Splice isoforms : SwissVarQ9H0A9
PhosPhoSitePlusQ9H0A9
Domains : Interpro (EBI)SPATC1    Speriolin_C    Speriolin_N   
Domain families : Pfam (Sanger)Speriolin_C (PF15059)    Speriolin_N (PF15058)   
Domain families : Pfam (NCBI)pfam15059    pfam15058   
Conserved Domain (NCBI)SPATC1L
DMDM Disease mutations84221
Blocks (Seattle)SPATC1L
SuperfamilyQ9H0A9
Human Protein AtlasENSG00000160284
Peptide AtlasQ9H0A9
HPRD10753
IPIIPI00908345   IPI00031044   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0A9
IntAct (EBI)Q9H0A9
FunCoupENSG00000160284
BioGRIDSPATC1L
STRING (EMBL)SPATC1L
ZODIACSPATC1L
Ontologies - Pathways
QuickGOQ9H0A9
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkSPATC1L
Atlas of Cancer Signalling NetworkSPATC1L
Wikipedia pathwaysSPATC1L
Orthology - Evolution
OrthoDB84221
GeneTree (enSembl)ENSG00000160284
Phylogenetic Trees/Animal Genes : TreeFamSPATC1L
HOVERGENQ9H0A9
HOGENOMQ9H0A9
Homologs : HomoloGeneSPATC1L
Homology/Alignments : Family Browser (UCSC)SPATC1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATC1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATC1L
dbVarSPATC1L
ClinVarSPATC1L
1000_GenomesSPATC1L 
Exome Variant ServerSPATC1L
ExAC (Exome Aggregation Consortium)SPATC1L (select the gene name)
Genetic variants : HAPMAP84221
Genomic Variants (DGV)SPATC1L [DGVbeta]
DECIPHER (Syndromes)21:47581062-47604373  ENSG00000160284
CONAN: Copy Number AnalysisSPATC1L 
Mutations
ICGC Data PortalSPATC1L 
TCGA Data PortalSPATC1L 
Broad Tumor PortalSPATC1L
OASIS PortalSPATC1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPATC1L
BioMutasearch SPATC1L
DgiDB (Drug Gene Interaction Database)SPATC1L
DoCM (Curated mutations)SPATC1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATC1L (select a term)
intoGenSPATC1L
Cancer3DSPATC1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612412   
Orphanet
MedgenSPATC1L
Genetic Testing Registry SPATC1L
NextProtQ9H0A9 [Medical]
TSGene84221
GENETestsSPATC1L
Huge Navigator SPATC1L [HugePedia]
snp3D : Map Gene to Disease84221
BioCentury BCIQSPATC1L
ClinGenSPATC1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84221
Chemical/Pharm GKB GenePA25851
Clinical trialSPATC1L
Miscellaneous
canSAR (ICR)SPATC1L (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATC1L
EVEXSPATC1L
GoPubMedSPATC1L
iHOPSPATC1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:24 CET 2017

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