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SPATS1 (spermatogenesis associated serine rich 1)

Identity

Alias_namesspermatogenesis associated, serine-rich 1
Alias_symbol (synonym)SPATA8
FLJ25442
SRSP1
Other aliasDDIP
HGNC (Hugo) SPATS1
LocusID (NCBI) 221409
Atlas_Id 74150
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 44342660 and ends at 44377167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC5L (6p21.1) / SPATS1 (6p21.1)SPATS1 (6p21.1) / SLC25A12 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;6)(p21;p21) AARS2/SPATS1
t(6;6)(p21;p21) CDC5L/SPATS1


External links

Nomenclature
HGNC (Hugo)SPATS1   22957
Cards
Entrez_Gene (NCBI)SPATS1  221409  spermatogenesis associated serine rich 1
AliasesDDIP; SPATA8; SRSP1
GeneCards (Weizmann)SPATS1
Ensembl hg19 (Hinxton)ENSG00000249481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249481 [Gene_View]  ENSG00000249481 [Sequence]  chr6:44342660-44377167 [Contig_View]  SPATS1 [Vega]
ICGC DataPortalENSG00000249481
TCGA cBioPortalSPATS1
AceView (NCBI)SPATS1
Genatlas (Paris)SPATS1
WikiGenes221409
SOURCE (Princeton)SPATS1
Genetics Home Reference (NIH)SPATS1
Genomic and cartography
GoldenPath hg38 (UCSC)SPATS1  -     chr6:44342660-44377167 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATS1  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblSPATS1 - 6p21.1 [CytoView hg19]  SPATS1 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBISPATS1 [Mapview hg19]  SPATS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA400657 AK058171 BC100956 BC100957 BC100958
RefSeq transcript (Entrez)NM_145026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATS1
Cluster EST : UnigeneHs.135283 [ NCBI ]
CGAP (NCI)Hs.135283
Alternative Splicing GalleryENSG00000249481
Gene ExpressionSPATS1 [ NCBI-GEO ]   SPATS1 [ EBI - ARRAY_EXPRESS ]   SPATS1 [ SEEK ]   SPATS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPATS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221409
GTEX Portal (Tissue expression)SPATS1
Human Protein AtlasENSG00000249481-SPATS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ496A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ496A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ496A3
Splice isoforms : SwissVarQ496A3
PhosPhoSitePlusQ496A3
Domains : Interpro (EBI)SASRP1   
Domain families : Pfam (Sanger)SASRP1 (PF15160)   
Domain families : Pfam (NCBI)pfam15160   
Conserved Domain (NCBI)SPATS1
DMDM Disease mutations221409
Blocks (Seattle)SPATS1
SuperfamilyQ496A3
Human Protein Atlas [tissue]ENSG00000249481-SPATS1 [tissue]
Peptide AtlasQ496A3
HPRD10248
IPIIPI00065058   IPI00867573   IPI00967138   IPI00964785   
Protein Interaction databases
DIP (DOE-UCLA)Q496A3
IntAct (EBI)Q496A3
FunCoupENSG00000249481
BioGRIDSPATS1
STRING (EMBL)SPATS1
ZODIACSPATS1
Ontologies - Pathways
QuickGOQ496A3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPATS1
Atlas of Cancer Signalling NetworkSPATS1
Wikipedia pathwaysSPATS1
Orthology - Evolution
OrthoDB221409
GeneTree (enSembl)ENSG00000249481
Phylogenetic Trees/Animal Genes : TreeFamSPATS1
HOVERGENQ496A3
HOGENOMQ496A3
Homologs : HomoloGeneSPATS1
Homology/Alignments : Family Browser (UCSC)SPATS1
Gene fusions - Rearrangements
Fusion : QuiverSPATS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATS1
dbVarSPATS1
ClinVarSPATS1
1000_GenomesSPATS1 
Exome Variant ServerSPATS1
ExAC (Exome Aggregation Consortium)ENSG00000249481
GNOMAD BrowserENSG00000249481
Varsome BrowserSPATS1
Genetic variants : HAPMAP221409
Genomic Variants (DGV)SPATS1 [DGVbeta]
DECIPHERSPATS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATS1 
Mutations
ICGC Data PortalSPATS1 
TCGA Data PortalSPATS1 
Broad Tumor PortalSPATS1
OASIS PortalSPATS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATS1
DgiDB (Drug Gene Interaction Database)SPATS1
DoCM (Curated mutations)SPATS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATS1 (select a term)
intoGenSPATS1
Cancer3DSPATS1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPATS1
MedgenSPATS1
Genetic Testing Registry SPATS1
NextProtQ496A3 [Medical]
TSGene221409
GENETestsSPATS1
Target ValidationSPATS1
Huge Navigator SPATS1 [HugePedia]
snp3D : Map Gene to Disease221409
BioCentury BCIQSPATS1
ClinGenSPATS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221409
Chemical/Pharm GKB GenePA134922278
Clinical trialSPATS1
Miscellaneous
canSAR (ICR)SPATS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATS1
EVEXSPATS1
GoPubMedSPATS1
iHOPSPATS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:32:54 CEST 2018

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