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SPATS2L (spermatogenesis associated serine rich 2 like)

Identity

Alias_namesspermatogenesis associated
Alias_symbol (synonym)DNAPTP6
SGNP
Other alias
HGNC (Hugo) SPATS2L
LocusID (NCBI) 26010
Atlas_Id 54660
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 200306262 and ends at 200482263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX21 (10q22.1) / SPATS2L (2q33.1)PPP3R1 (2p14) / SPATS2L (2q33.1)SIK3 (11q23.3) / SPATS2L (2q33.1)
SNX7 (1p21.3) / SPATS2L (2q33.1)SPATS2L (2q33.1) / COL3A1 (2q32.2)ZNRF1 (16q23.1) / SPATS2L (2q33.1)
PPP3R1 2p14 / SPATS2L 2q33.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPATS2L   24574
Cards
Entrez_Gene (NCBI)SPATS2L  26010  spermatogenesis associated serine rich 2 like
AliasesDNAPTP6; SGNP
GeneCards (Weizmann)SPATS2L
Ensembl hg19 (Hinxton)ENSG00000196141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196141 [Gene_View]  chr2:200306262-200482263 [Contig_View]  SPATS2L [Vega]
ICGC DataPortalENSG00000196141
TCGA cBioPortalSPATS2L
AceView (NCBI)SPATS2L
Genatlas (Paris)SPATS2L
WikiGenes26010
SOURCE (Princeton)SPATS2L
Genetics Home Reference (NIH)SPATS2L
Genomic and cartography
GoldenPath hg38 (UCSC)SPATS2L  -     chr2:200306262-200482263 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPATS2L  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblSPATS2L - 2q33.1 [CytoView hg19]  SPATS2L - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBISPATS2L [Mapview hg19]  SPATS2L [Mapview hg38]
OMIM613817   
Gene and transcription
Genbank (Entrez)AF193059 AK002064 AK021816 AK024200 AK090703
RefSeq transcript (Entrez)NM_001100422 NM_001100423 NM_001100424 NM_001282735 NM_001282743 NM_001282744 NM_015535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPATS2L
Cluster EST : UnigeneHs.120323 [ NCBI ]
CGAP (NCI)Hs.120323
Alternative Splicing GalleryENSG00000196141
Gene ExpressionSPATS2L [ NCBI-GEO ]   SPATS2L [ EBI - ARRAY_EXPRESS ]   SPATS2L [ SEEK ]   SPATS2L [ MEM ]
Gene Expression Viewer (FireBrowse)SPATS2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26010
GTEX Portal (Tissue expression)SPATS2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUQ6
Splice isoforms : SwissVarQ9NUQ6
PhosPhoSitePlusQ9NUQ6
Domains : Interpro (EBI)DUF1387    UBA-like   
Domain families : Pfam (Sanger)DUF1387 (PF07139)   
Domain families : Pfam (NCBI)pfam07139   
Conserved Domain (NCBI)SPATS2L
DMDM Disease mutations26010
Blocks (Seattle)SPATS2L
SuperfamilyQ9NUQ6
Human Protein AtlasENSG00000196141
Peptide AtlasQ9NUQ6
HPRD10916
IPIIPI00916831   IPI00103027   IPI00023532   IPI00917040   IPI00956176   IPI00916902   IPI00917360   IPI00915976   IPI00917531   IPI00917948   IPI01010942   IPI00916544   IPI00915844   IPI00925916   IPI01013077   IPI00926880   IPI00927056   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUQ6
IntAct (EBI)Q9NUQ6
FunCoupENSG00000196141
BioGRIDSPATS2L
STRING (EMBL)SPATS2L
ZODIACSPATS2L
Ontologies - Pathways
QuickGOQ9NUQ6
Ontology : AmiGORNA binding  nucleus  nucleolus  cytosol  protein complex  
Ontology : EGO-EBIRNA binding  nucleus  nucleolus  cytosol  protein complex  
NDEx NetworkSPATS2L
Atlas of Cancer Signalling NetworkSPATS2L
Wikipedia pathwaysSPATS2L
Orthology - Evolution
OrthoDB26010
GeneTree (enSembl)ENSG00000196141
Phylogenetic Trees/Animal Genes : TreeFamSPATS2L
HOVERGENQ9NUQ6
HOGENOMQ9NUQ6
Homologs : HomoloGeneSPATS2L
Homology/Alignments : Family Browser (UCSC)SPATS2L
Gene fusions - Rearrangements
Fusion : MitelmanPPP3R1/SPATS2L [2p14/2q33.1]  [t(2;2)(p14;q33)]  
Fusion : MitelmanSPATS2L/COL3A1 [2q33.1/2q32.2]  [t(2;2)(q32;q33)]  
Fusion: TCGAPPP3R1 2p14 SPATS2L 2q33.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPATS2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPATS2L
dbVarSPATS2L
ClinVarSPATS2L
1000_GenomesSPATS2L 
Exome Variant ServerSPATS2L
ExAC (Exome Aggregation Consortium)SPATS2L (select the gene name)
Genetic variants : HAPMAP26010
Genomic Variants (DGV)SPATS2L [DGVbeta]
DECIPHERSPATS2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPATS2L 
Mutations
ICGC Data PortalSPATS2L 
TCGA Data PortalSPATS2L 
Broad Tumor PortalSPATS2L
OASIS PortalSPATS2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPATS2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPATS2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPATS2L
DgiDB (Drug Gene Interaction Database)SPATS2L
DoCM (Curated mutations)SPATS2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPATS2L (select a term)
intoGenSPATS2L
Cancer3DSPATS2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613817   
Orphanet
MedgenSPATS2L
Genetic Testing Registry SPATS2L
NextProtQ9NUQ6 [Medical]
TSGene26010
GENETestsSPATS2L
Huge Navigator SPATS2L [HugePedia]
snp3D : Map Gene to Disease26010
BioCentury BCIQSPATS2L
ClinGenSPATS2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26010
Chemical/Pharm GKB GenePA165697465
Clinical trialSPATS2L
Miscellaneous
canSAR (ICR)SPATS2L (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPATS2L
EVEXSPATS2L
GoPubMedSPATS2L
iHOPSPATS2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:46 CEST 2017

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