Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPDYA (speedy/RINGO cell cycle regulator family member A)

Identity

Alias_namesSPDY1
speedy homolog 1 (Drosophila)
speedy homolog A (Xenopus laevis)
Alias_symbol (synonym)SPY1
Ringo3
Other aliasRINGO3
RINGOA
HGNC (Hugo) SPDYA
LocusID (NCBI) 245711
Atlas_Id 50681
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 28815997 and ends at 28840809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BIRC5 (17q25.3) / SPDYA (2p23.2)NUB1 (7q36.1) / SPDYA (2p23.2)SENP1 (12q13.11) / SPDYA (2p23.2)
SPDYA (2p23.2) / NUB1 (7q36.1)SPDYA (2p23.2) / SPDYA (2p23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYA   30613
Cards
Entrez_Gene (NCBI)SPDYA  245711  speedy/RINGO cell cycle regulator family member A
AliasesRINGO3; RINGOA; SPDY1; SPY1
GeneCards (Weizmann)SPDYA
Ensembl hg19 (Hinxton)ENSG00000163806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163806 [Gene_View]  chr2:28815997-28840809 [Contig_View]  SPDYA [Vega]
ICGC DataPortalENSG00000163806
TCGA cBioPortalSPDYA
AceView (NCBI)SPDYA
Genatlas (Paris)SPDYA
WikiGenes245711
SOURCE (Princeton)SPDYA
Genetics Home Reference (NIH)SPDYA
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYA  -     chr2:28815997-28840809 +  2p23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYA  -     2p23.2   [Description]    (hg19-Feb_2009)
EnsemblSPDYA - 2p23.2 [CytoView hg19]  SPDYA - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBISPDYA [Mapview hg19]  SPDYA [Mapview hg38]
OMIM614029   
Gene and transcription
Genbank (Entrez)AA625975 AY820303 AY820304 BC047224 BC093005
RefSeq transcript (Entrez)NM_001008779 NM_001142634 NM_182756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYA
Cluster EST : UnigeneHs.511956 [ NCBI ]
CGAP (NCI)Hs.511956
Alternative Splicing GalleryENSG00000163806
Gene ExpressionSPDYA [ NCBI-GEO ]   SPDYA [ EBI - ARRAY_EXPRESS ]   SPDYA [ SEEK ]   SPDYA [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)245711
GTEX Portal (Tissue expression)SPDYA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ70
Splice isoforms : SwissVarQ5MJ70
PhosPhoSitePlusQ5MJ70
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYA
DMDM Disease mutations245711
Blocks (Seattle)SPDYA
SuperfamilyQ5MJ70
Human Protein AtlasENSG00000163806
Peptide AtlasQ5MJ70
HPRD18095
IPIIPI00554586   IPI00549840   IPI00892750   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ70
IntAct (EBI)Q5MJ70
FunCoupENSG00000163806
BioGRIDSPDYA
STRING (EMBL)SPDYA
ZODIACSPDYA
Ontologies - Pathways
QuickGOQ5MJ70
Ontology : AmiGOG1/S transition of mitotic cell cycle  nucleus  nucleoplasm  cellular response to DNA damage stimulus  male meiotic nuclear division  multicellular organism development  positive regulation of cell proliferation  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  nucleus  nucleoplasm  cellular response to DNA damage stimulus  male meiotic nuclear division  multicellular organism development  positive regulation of cell proliferation  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  
Pathways : KEGGOocyte meiosis    Progesterone-mediated oocyte maturation   
NDEx NetworkSPDYA
Atlas of Cancer Signalling NetworkSPDYA
Wikipedia pathwaysSPDYA
Orthology - Evolution
OrthoDB245711
GeneTree (enSembl)ENSG00000163806
Phylogenetic Trees/Animal Genes : TreeFamSPDYA
HOVERGENQ5MJ70
HOGENOMQ5MJ70
Homologs : HomoloGeneSPDYA
Homology/Alignments : Family Browser (UCSC)SPDYA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYA
dbVarSPDYA
ClinVarSPDYA
1000_GenomesSPDYA 
Exome Variant ServerSPDYA
ExAC (Exome Aggregation Consortium)SPDYA (select the gene name)
Genetic variants : HAPMAP245711
Genomic Variants (DGV)SPDYA [DGVbeta]
DECIPHERSPDYA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYA 
Mutations
ICGC Data PortalSPDYA 
TCGA Data PortalSPDYA 
Broad Tumor PortalSPDYA
OASIS PortalSPDYA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPDYA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYA
DgiDB (Drug Gene Interaction Database)SPDYA
DoCM (Curated mutations)SPDYA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYA (select a term)
intoGenSPDYA
Cancer3DSPDYA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614029   
Orphanet
MedgenSPDYA
Genetic Testing Registry SPDYA
NextProtQ5MJ70 [Medical]
TSGene245711
GENETestsSPDYA
Huge Navigator SPDYA [HugePedia]
snp3D : Map Gene to Disease245711
BioCentury BCIQSPDYA
ClinGenSPDYA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245711
Chemical/Pharm GKB GenePA134954857
Clinical trialSPDYA
Miscellaneous
canSAR (ICR)SPDYA (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYA
EVEXSPDYA
GoPubMedSPDYA
iHOPSPDYA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:38:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.