Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPDYC (speedy/RINGO cell cycle regulator family member C)

Identity

Alias (NCBI)RINGOC
Ringo2
HGNC (Hugo) SPDYC
HGNC Alias symbRingo2
HGNC Previous namespeedy homolog C (Xenopus laevis)
LocusID (NCBI) 387778
Atlas_Id 54662
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65170154 and ends at 65173244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPN1 (11q13.1) / SPDYC (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPDYC   32681
Cards
Entrez_Gene (NCBI)SPDYC    speedy/RINGO cell cycle regulator family member C
AliasesRINGOC; Ringo2
GeneCards (Weizmann)SPDYC
Ensembl hg19 (Hinxton)ENSG00000204710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204710 [Gene_View]  ENSG00000204710 [Sequence]  chr11:65170154-65173244 [Contig_View]  SPDYC [Vega]
ICGC DataPortalENSG00000204710
TCGA cBioPortalSPDYC
AceView (NCBI)SPDYC
Genatlas (Paris)SPDYC
SOURCE (Princeton)SPDYC
Genetics Home Reference (NIH)SPDYC
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYC  -     chr11:65170154-65173244 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYC  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathSPDYC - 11q13.1 [CytoView hg19]  SPDYC - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000204710
Genome Data Viewer NCBISPDYC [Mapview hg19]  
OMIM614030   
Gene and transcription
Genbank (Entrez)AY820305 BC137244 BC137246 BC144548
RefSeq transcript (Entrez)NM_001008778
Consensus coding sequences : CCDS (NCBI)SPDYC
Gene ExpressionSPDYC [ NCBI-GEO ]   SPDYC [ EBI - ARRAY_EXPRESS ]   SPDYC [ SEEK ]   SPDYC [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYC [ Firebrowse - Broad ]
GenevisibleExpression of SPDYC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387778
GTEX Portal (Tissue expression)SPDYC
Human Protein AtlasENSG00000204710-SPDYC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ68
PhosPhoSitePlusQ5MJ68
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYC
SuperfamilyQ5MJ68
AlphaFold pdb e-kbQ5MJ68   
Human Protein Atlas [tissue]ENSG00000204710-SPDYC [tissue]
HPRD17367
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ68
IntAct (EBI)Q5MJ68
BioGRIDSPDYC
STRING (EMBL)SPDYC
ZODIACSPDYC
Ontologies - Pathways
QuickGOQ5MJ68
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cell cycle  protein kinase binding  protein kinase binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cell cycle  protein kinase binding  protein kinase binding  
Pathways : KEGGOocyte meiosis    Progesterone-mediated oocyte maturation   
NDEx NetworkSPDYC
Atlas of Cancer Signalling NetworkSPDYC
Wikipedia pathwaysSPDYC
Orthology - Evolution
OrthoDB387778
GeneTree (enSembl)ENSG00000204710
Phylogenetic Trees/Animal Genes : TreeFamSPDYC
Homologs : HomoloGeneSPDYC
Homology/Alignments : Family Browser (UCSC)SPDYC
Gene fusions - Rearrangements
Fusion : MitelmanCAPN1/SPDYC [11q13.1/11q13.1]  
Fusion : QuiverSPDYC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYC
dbVarSPDYC
ClinVarSPDYC
MonarchSPDYC
1000_GenomesSPDYC 
Exome Variant ServerSPDYC
GNOMAD BrowserENSG00000204710
Varsome BrowserSPDYC
ACMGSPDYC variants
VarityQ5MJ68
Genomic Variants (DGV)SPDYC [DGVbeta]
DECIPHERSPDYC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYC 
Mutations
ICGC Data PortalSPDYC 
TCGA Data PortalSPDYC 
Broad Tumor PortalSPDYC
OASIS PortalSPDYC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPDYC
Mutations and Diseases : HGMDSPDYC
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPDYC
DgiDB (Drug Gene Interaction Database)SPDYC
DoCM (Curated mutations)SPDYC
CIViC (Clinical Interpretations of Variants in Cancer)SPDYC
Cancer3DSPDYC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614030   
Orphanet
DisGeNETSPDYC
MedgenSPDYC
Genetic Testing Registry SPDYC
NextProtQ5MJ68 [Medical]
GENETestsSPDYC
Target ValidationSPDYC
Huge Navigator SPDYC [HugePedia]
ClinGenSPDYC
Clinical trials, drugs, therapy
MyCancerGenomeSPDYC
Protein Interactions : CTDSPDYC
Pharm GKB GenePA144596271
PharosQ5MJ68
Clinical trialSPDYC
Miscellaneous
canSAR (ICR)SPDYC
HarmonizomeSPDYC
DataMed IndexSPDYC
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPDYC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:32:51 CEST 2021

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