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SPDYC (speedy/RINGO cell cycle regulator family member C)

Identity

Alias (NCBI)RINGOC
Ringo2
HGNC (Hugo) SPDYC
HGNC Alias symbRingo2
HGNC Previous namespeedy homolog C (Xenopus laevis)
LocusID (NCBI) 387778
Atlas_Id 54662
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65170154 and ends at 65173244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPN1 (11q13.1) / SPDYC (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CAPN1/SPDYC (11q13)


External links

Nomenclature
HGNC (Hugo)SPDYC   32681
Cards
Entrez_Gene (NCBI)SPDYC  387778  speedy/RINGO cell cycle regulator family member C
AliasesRINGOC; Ringo2
GeneCards (Weizmann)SPDYC
Ensembl hg19 (Hinxton)ENSG00000204710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204710 [Gene_View]  ENSG00000204710 [Sequence]  chr11:65170154-65173244 [Contig_View]  SPDYC [Vega]
ICGC DataPortalENSG00000204710
TCGA cBioPortalSPDYC
AceView (NCBI)SPDYC
Genatlas (Paris)SPDYC
WikiGenes387778
SOURCE (Princeton)SPDYC
Genetics Home Reference (NIH)SPDYC
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYC  -     chr11:65170154-65173244 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYC  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathSPDYC - 11q13.1 [CytoView hg19]  SPDYC - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000204710
genome Data Viewer NCBISPDYC [Mapview hg19]  
OMIM614030   
Gene and transcription
Genbank (Entrez)AY820305 BC137244 BC137246 BC144548
RefSeq transcript (Entrez)NM_001008778
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYC
Alternative Splicing GalleryENSG00000204710
Gene ExpressionSPDYC [ NCBI-GEO ]   SPDYC [ EBI - ARRAY_EXPRESS ]   SPDYC [ SEEK ]   SPDYC [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYC [ Firebrowse - Broad ]
GenevisibleExpression of SPDYC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387778
GTEX Portal (Tissue expression)SPDYC
Human Protein AtlasENSG00000204710-SPDYC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ68
Splice isoforms : SwissVarQ5MJ68
PhosPhoSitePlusQ5MJ68
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYC
DMDM Disease mutations387778
Blocks (Seattle)SPDYC
SuperfamilyQ5MJ68
Human Protein Atlas [tissue]ENSG00000204710-SPDYC [tissue]
Peptide AtlasQ5MJ68
HPRD17367
IPIIPI00549870   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ68
IntAct (EBI)Q5MJ68
FunCoupENSG00000204710
BioGRIDSPDYC
STRING (EMBL)SPDYC
ZODIACSPDYC
Ontologies - Pathways
QuickGOQ5MJ68
Ontology : AmiGOnucleus  cytoplasm  cell cycle  protein kinase binding  protein kinase binding  
Ontology : EGO-EBInucleus  cytoplasm  cell cycle  protein kinase binding  protein kinase binding  
Pathways : KEGGOocyte meiosis    Progesterone-mediated oocyte maturation   
NDEx NetworkSPDYC
Atlas of Cancer Signalling NetworkSPDYC
Wikipedia pathwaysSPDYC
Orthology - Evolution
OrthoDB387778
GeneTree (enSembl)ENSG00000204710
Phylogenetic Trees/Animal Genes : TreeFamSPDYC
HOGENOMQ5MJ68
Homologs : HomoloGeneSPDYC
Homology/Alignments : Family Browser (UCSC)SPDYC
Gene fusions - Rearrangements
Fusion : MitelmanCAPN1/SPDYC [11q13.1/11q13.1]  
Fusion : QuiverSPDYC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYC
dbVarSPDYC
ClinVarSPDYC
1000_GenomesSPDYC 
Exome Variant ServerSPDYC
GNOMAD BrowserENSG00000204710
Varsome BrowserSPDYC
Genetic variants : HAPMAP387778
Genomic Variants (DGV)SPDYC [DGVbeta]
DECIPHERSPDYC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYC 
Mutations
ICGC Data PortalSPDYC 
TCGA Data PortalSPDYC 
Broad Tumor PortalSPDYC
OASIS PortalSPDYC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPDYC
Mutations and Diseases : HGMDSPDYC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYC
DgiDB (Drug Gene Interaction Database)SPDYC
DoCM (Curated mutations)SPDYC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYC (select a term)
intoGenSPDYC
Cancer3DSPDYC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614030   
Orphanet
DisGeNETSPDYC
MedgenSPDYC
Genetic Testing Registry SPDYC
NextProtQ5MJ68 [Medical]
TSGene387778
GENETestsSPDYC
Target ValidationSPDYC
Huge Navigator SPDYC [HugePedia]
snp3D : Map Gene to Disease387778
BioCentury BCIQSPDYC
ClinGenSPDYC
Clinical trials, drugs, therapy
Protein Interactions : CTD387778
Pharm GKB GenePA144596271
Clinical trialSPDYC
Miscellaneous
canSAR (ICR)SPDYC (select the gene name)
HarmonizomeSPDYC
DataMed IndexSPDYC
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYC
EVEXSPDYC
GoPubMedSPDYC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jul 16 15:37:17 CEST 2020

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