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SPDYE16 (speedy/RINGO cell cycle regulator family member E16)

Identity

Other alias-
HGNC (Hugo) SPDYE16
LocusID (NCBI) 102723555
Atlas_Id 79451
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76533694 and ends at 76540386 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SPDYE16   51512
Cards
Entrez_Gene (NCBI)SPDYE16  102723555  speedy/RINGO cell cycle regulator family member E16
Aliases
GeneCards (Weizmann)SPDYE16
Ensembl hg19 (Hinxton)ENSG00000185040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185040 [Gene_View]  chr7:76533694-76540386 [Contig_View]  SPDYE16 [Vega]
ICGC DataPortalENSG00000185040
TCGA cBioPortalSPDYE16
AceView (NCBI)SPDYE16
Genatlas (Paris)SPDYE16
WikiGenes102723555
SOURCE (Princeton)SPDYE16
Genetics Home Reference (NIH)SPDYE16
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE16  -     chr7:76533694-76540386 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE16  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSPDYE16 - 7q11.23 [CytoView hg19]  SPDYE16 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISPDYE16 [Mapview hg19]  SPDYE16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DN831161
RefSeq transcript (Entrez)NM_001351597
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_187561
Consensus coding sequences : CCDS (NCBI)SPDYE16
Cluster EST : UnigeneHs.729358 [ NCBI ]
CGAP (NCI)Hs.729358
Alternative Splicing GalleryENSG00000185040
Gene ExpressionSPDYE16 [ NCBI-GEO ]   SPDYE16 [ EBI - ARRAY_EXPRESS ]   SPDYE16 [ SEEK ]   SPDYE16 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723555
GTEX Portal (Tissue expression)SPDYE16
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNV3
Splice isoforms : SwissVarA6NNV3
PhosPhoSitePlusA6NNV3
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE16
DMDM Disease mutations102723555
Blocks (Seattle)SPDYE16
SuperfamilyA6NNV3
Human Protein AtlasENSG00000185040
Peptide AtlasA6NNV3
Protein Interaction databases
DIP (DOE-UCLA)A6NNV3
IntAct (EBI)A6NNV3
FunCoupENSG00000185040
BioGRIDSPDYE16
STRING (EMBL)SPDYE16
ZODIACSPDYE16
Ontologies - Pathways
QuickGOA6NNV3
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE16
Atlas of Cancer Signalling NetworkSPDYE16
Wikipedia pathwaysSPDYE16
Orthology - Evolution
OrthoDB102723555
GeneTree (enSembl)ENSG00000185040
Phylogenetic Trees/Animal Genes : TreeFamSPDYE16
HOVERGENA6NNV3
HOGENOMA6NNV3
Homologs : HomoloGeneSPDYE16
Homology/Alignments : Family Browser (UCSC)SPDYE16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE16
dbVarSPDYE16
ClinVarSPDYE16
1000_GenomesSPDYE16 
Exome Variant ServerSPDYE16
ExAC (Exome Aggregation Consortium)SPDYE16 (select the gene name)
Genetic variants : HAPMAP102723555
Genomic Variants (DGV)SPDYE16 [DGVbeta]
DECIPHERSPDYE16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE16 
Mutations
ICGC Data PortalSPDYE16 
TCGA Data PortalSPDYE16 
Broad Tumor PortalSPDYE16
OASIS PortalSPDYE16 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPDYE16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE16
DgiDB (Drug Gene Interaction Database)SPDYE16
DoCM (Curated mutations)SPDYE16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE16 (select a term)
intoGenSPDYE16
Cancer3DSPDYE16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE16
Genetic Testing Registry SPDYE16
NextProtA6NNV3 [Medical]
TSGene102723555
GENETestsSPDYE16
Target ValidationSPDYE16
Huge Navigator SPDYE16 [HugePedia]
snp3D : Map Gene to Disease102723555
BioCentury BCIQSPDYE16
ClinGenSPDYE16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723555
Clinical trialSPDYE16
Miscellaneous
canSAR (ICR)SPDYE16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE16
EVEXSPDYE16
GoPubMedSPDYE16
iHOPSPDYE16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:18 CEST 2017

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