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SPDYE2 (speedy/RINGO cell cycle regulator family member E2)

Identity

Alias_namesspeedy homolog E2 (Xenopus laevis)
Alias_symbol (synonym)MGC119295
Other aliasSPDYB2-L1
HGNC (Hugo) SPDYE2
LocusID (NCBI) 441273
Atlas_Id 74158
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102551232 and ends at 102562310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE2   33841
Cards
Entrez_Gene (NCBI)SPDYE2  441273  speedy/RINGO cell cycle regulator family member E2
AliasesSPDYB2-L1
GeneCards (Weizmann)SPDYE2
Ensembl hg19 (Hinxton)ENSG00000205238 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205238 [Gene_View]  chr7:102551232-102562310 [Contig_View]  SPDYE2 [Vega]
ICGC DataPortalENSG00000205238
TCGA cBioPortalSPDYE2
AceView (NCBI)SPDYE2
Genatlas (Paris)SPDYE2
WikiGenes441273
SOURCE (Princeton)SPDYE2
Genetics Home Reference (NIH)SPDYE2
Genomic and cartography
GoldenPath hg38 (UCSC)SPDYE2  -     chr7:102551232-102562310 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPDYE2  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblSPDYE2 - 7q22.1 [CytoView hg19]  SPDYE2 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISPDYE2 [Mapview hg19]  SPDYE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302217 BC100973 BF809327 DR731150 JQ023160
RefSeq transcript (Entrez)NM_001031618
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPDYE2
Cluster EST : UnigeneHs.656428 [ NCBI ]
CGAP (NCI)Hs.656428
Alternative Splicing GalleryENSG00000205238
Gene ExpressionSPDYE2 [ NCBI-GEO ]   SPDYE2 [ EBI - ARRAY_EXPRESS ]   SPDYE2 [ SEEK ]   SPDYE2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441273
GTEX Portal (Tissue expression)SPDYE2
Human Protein AtlasENSG00000205238-SPDYE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495Y8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495Y8
Splice isoforms : SwissVarQ495Y8
PhosPhoSitePlusQ495Y8
Domains : Interpro (EBI)Speedy   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE2
DMDM Disease mutations441273
Blocks (Seattle)SPDYE2
SuperfamilyQ495Y8
Human Protein Atlas [tissue]ENSG00000205238-SPDYE2 [tissue]
Peptide AtlasQ495Y8
IPIIPI00930539   
Protein Interaction databases
DIP (DOE-UCLA)Q495Y8
IntAct (EBI)Q495Y8
FunCoupENSG00000205238
BioGRIDSPDYE2
STRING (EMBL)SPDYE2
ZODIACSPDYE2
Ontologies - Pathways
QuickGOQ495Y8
Ontology : AmiGOprotein binding  protein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein binding  protein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE2
Atlas of Cancer Signalling NetworkSPDYE2
Wikipedia pathwaysSPDYE2
Orthology - Evolution
OrthoDB441273
GeneTree (enSembl)ENSG00000205238
Phylogenetic Trees/Animal Genes : TreeFamSPDYE2
HOVERGENQ495Y8
HOGENOMQ495Y8
Homologs : HomoloGeneSPDYE2
Homology/Alignments : Family Browser (UCSC)SPDYE2
Gene fusions - Rearrangements
Tumor Fusion PortalSPDYE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE2
dbVarSPDYE2
ClinVarSPDYE2
1000_GenomesSPDYE2 
Exome Variant ServerSPDYE2
ExAC (Exome Aggregation Consortium)ENSG00000205238
GNOMAD BrowserENSG00000205238
Genetic variants : HAPMAP441273
Genomic Variants (DGV)SPDYE2 [DGVbeta]
DECIPHERSPDYE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPDYE2 
Mutations
ICGC Data PortalSPDYE2 
TCGA Data PortalSPDYE2 
Broad Tumor PortalSPDYE2
OASIS PortalSPDYE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPDYE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE2
DgiDB (Drug Gene Interaction Database)SPDYE2
DoCM (Curated mutations)SPDYE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE2 (select a term)
intoGenSPDYE2
Cancer3DSPDYE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPDYE2
MedgenSPDYE2
Genetic Testing Registry SPDYE2
NextProtQ495Y8 [Medical]
TSGene441273
GENETestsSPDYE2
Target ValidationSPDYE2
Huge Navigator SPDYE2 [HugePedia]
snp3D : Map Gene to Disease441273
BioCentury BCIQSPDYE2
ClinGenSPDYE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441273
Chemical/Pharm GKB GenePA164726233
Clinical trialSPDYE2
Miscellaneous
canSAR (ICR)SPDYE2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE2
EVEXSPDYE2
GoPubMedSPDYE2
iHOPSPDYE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:18 CET 2017

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