Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPDYE2B (speedy/RINGO cell cycle regulator family member E2B)

Identity

Other aliasSPDYE2L
HGNC (Hugo) SPDYE2B
LocusID (NCBI) 100310812
Atlas_Id 74159
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102191679 and ends at 102202757 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE2B   48334
Cards
Entrez_Gene (NCBI)SPDYE2B  100310812  speedy/RINGO cell cycle regulator family member E2B
AliasesSPDYE2L
GeneCards (Weizmann)SPDYE2B
Ensembl hg19 (Hinxton)ENSG00000173678 [Gene_View]  chr7:102191679-102202757 [Contig_View]  SPDYE2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000173678 [Gene_View]  chr7:102191679-102202757 [Contig_View]  SPDYE2B [Vega]
ICGC DataPortalENSG00000173678
TCGA cBioPortalSPDYE2B
AceView (NCBI)SPDYE2B
Genatlas (Paris)SPDYE2B
WikiGenes100310812
SOURCE (Princeton)SPDYE2B
Genetics Home Reference (NIH)SPDYE2B
Genomic and cartography
GoldenPath hg19 (UCSC)SPDYE2B  -     chr7:102191679-102202757 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPDYE2B  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblSPDYE2B - 7q22.1 [CytoView hg19]  SPDYE2B - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISPDYE2B [Mapview hg19]  SPDYE2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001166339
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SPDYE2B
Cluster EST : UnigeneHs.433879 [ NCBI ]
CGAP (NCI)Hs.433879
Alternative Splicing GalleryENSG00000173678
Gene ExpressionSPDYE2B [ NCBI-GEO ]   SPDYE2B [ EBI - ARRAY_EXPRESS ]   SPDYE2B [ SEEK ]   SPDYE2B [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100310812
GTEX Portal (Tissue expression)SPDYE2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHP3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHP3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHP3
Splice isoforms : SwissVarA6NHP3
PhosPhoSitePlusA6NHP3
Domains : Interpro (EBI)Cell_cycle_regulatory_Spy1   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE2B
DMDM Disease mutations100310812
Blocks (Seattle)SPDYE2B
SuperfamilyA6NHP3
Human Protein AtlasENSG00000173678
Peptide AtlasA6NHP3
IPIIPI00941436   
Protein Interaction databases
DIP (DOE-UCLA)A6NHP3
IntAct (EBI)A6NHP3
FunCoupENSG00000173678
BioGRIDSPDYE2B
STRING (EMBL)SPDYE2B
ZODIACSPDYE2B
Ontologies - Pathways
QuickGOA6NHP3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPDYE2B
Atlas of Cancer Signalling NetworkSPDYE2B
Wikipedia pathwaysSPDYE2B
Orthology - Evolution
OrthoDB100310812
GeneTree (enSembl)ENSG00000173678
Phylogenetic Trees/Animal Genes : TreeFamSPDYE2B
HOVERGENA6NHP3
HOGENOMA6NHP3
Homologs : HomoloGeneSPDYE2B
Homology/Alignments : Family Browser (UCSC)SPDYE2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE2B
dbVarSPDYE2B
ClinVarSPDYE2B
1000_GenomesSPDYE2B 
Exome Variant ServerSPDYE2B
ExAC (Exome Aggregation Consortium)SPDYE2B (select the gene name)
Genetic variants : HAPMAP100310812
Genomic Variants (DGV)SPDYE2B [DGVbeta]
DECIPHER (Syndromes)7:102191679-102202757  ENSG00000173678
CONAN: Copy Number AnalysisSPDYE2B 
Mutations
ICGC Data PortalSPDYE2B 
TCGA Data PortalSPDYE2B 
Broad Tumor PortalSPDYE2B
OASIS PortalSPDYE2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPDYE2B
BioMutasearch SPDYE2B
DgiDB (Drug Gene Interaction Database)SPDYE2B
DoCM (Curated mutations)SPDYE2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE2B (select a term)
intoGenSPDYE2B
Cancer3DSPDYE2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE2B
Genetic Testing Registry SPDYE2B
NextProtA6NHP3 [Medical]
TSGene100310812
GENETestsSPDYE2B
Huge Navigator SPDYE2B [HugePedia]
snp3D : Map Gene to Disease100310812
BioCentury BCIQSPDYE2B
ClinGenSPDYE2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100310812
Clinical trialSPDYE2B
Miscellaneous
canSAR (ICR)SPDYE2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE2B
EVEXSPDYE2B
GoPubMedSPDYE2B
iHOPSPDYE2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:26 CET 2017

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