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SPDYE3 (speedy/RINGO cell cycle regulator family member E3)

Identity

Alias_namesspeedy homolog E3 (Xenopus laevis)
Other alias-
HGNC (Hugo) SPDYE3
LocusID (NCBI) 441272
Atlas_Id 74160
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99905325 and ends at 99919819 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPDYE3   35462
Cards
Entrez_Gene (NCBI)SPDYE3  441272  speedy/RINGO cell cycle regulator family member E3
Aliases
GeneCards (Weizmann)SPDYE3
Ensembl hg19 (Hinxton)ENSG00000214300 [Gene_View]  chr7:99905325-99919819 [Contig_View]  SPDYE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214300 [Gene_View]  chr7:99905325-99919819 [Contig_View]  SPDYE3 [Vega]
ICGC DataPortalENSG00000214300
TCGA cBioPortalSPDYE3
AceView (NCBI)SPDYE3
Genatlas (Paris)SPDYE3
WikiGenes441272
SOURCE (Princeton)SPDYE3
Genetics Home Reference (NIH)SPDYE3
Genomic and cartography
GoldenPath hg19 (UCSC)SPDYE3  -     chr7:99905325-99919819 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPDYE3  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblSPDYE3 - 7q22.1 [CytoView hg19]  SPDYE3 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISPDYE3 [Mapview hg19]  SPDYE3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC056606 BC100972
RefSeq transcript (Entrez)NM_001004351
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SPDYE3
Cluster EST : UnigeneHs.703626 [ NCBI ]
CGAP (NCI)Hs.703626
Alternative Splicing GalleryENSG00000214300
Gene ExpressionSPDYE3 [ NCBI-GEO ]   SPDYE3 [ EBI - ARRAY_EXPRESS ]   SPDYE3 [ SEEK ]   SPDYE3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPDYE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441272
GTEX Portal (Tissue expression)SPDYE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKU9
Splice isoforms : SwissVarA6NKU9
PhosPhoSitePlusA6NKU9
Domains : Interpro (EBI)Cell_cycle_regulatory_Spy1   
Domain families : Pfam (Sanger)Spy1 (PF11357)   
Domain families : Pfam (NCBI)pfam11357   
Conserved Domain (NCBI)SPDYE3
DMDM Disease mutations441272
Blocks (Seattle)SPDYE3
SuperfamilyA6NKU9
Human Protein AtlasENSG00000214300
Peptide AtlasA6NKU9
HPRD14693
IPIIPI00925329   IPI00940692   
Protein Interaction databases
DIP (DOE-UCLA)A6NKU9
IntAct (EBI)A6NKU9
FunCoupENSG00000214300
BioGRIDSPDYE3
STRING (EMBL)SPDYE3
ZODIACSPDYE3
Ontologies - Pathways
QuickGOA6NKU9
Ontology : AmiGOprotein kinase binding  regulation of protein kinase activity  
Ontology : EGO-EBIprotein kinase binding  regulation of protein kinase activity  
NDEx NetworkSPDYE3
Atlas of Cancer Signalling NetworkSPDYE3
Wikipedia pathwaysSPDYE3
Orthology - Evolution
OrthoDB441272
GeneTree (enSembl)ENSG00000214300
Phylogenetic Trees/Animal Genes : TreeFamSPDYE3
HOVERGENA6NKU9
HOGENOMA6NKU9
Homologs : HomoloGeneSPDYE3
Homology/Alignments : Family Browser (UCSC)SPDYE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPDYE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPDYE3
dbVarSPDYE3
ClinVarSPDYE3
1000_GenomesSPDYE3 
Exome Variant ServerSPDYE3
ExAC (Exome Aggregation Consortium)SPDYE3 (select the gene name)
Genetic variants : HAPMAP441272
Genomic Variants (DGV)SPDYE3 [DGVbeta]
DECIPHER (Syndromes)7:99905325-99919819  ENSG00000214300
CONAN: Copy Number AnalysisSPDYE3 
Mutations
ICGC Data PortalSPDYE3 
TCGA Data PortalSPDYE3 
Broad Tumor PortalSPDYE3
OASIS PortalSPDYE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPDYE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPDYE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPDYE3
DgiDB (Drug Gene Interaction Database)SPDYE3
DoCM (Curated mutations)SPDYE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPDYE3 (select a term)
intoGenSPDYE3
Cancer3DSPDYE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPDYE3
Genetic Testing Registry SPDYE3
NextProtA6NKU9 [Medical]
TSGene441272
GENETestsSPDYE3
Huge Navigator SPDYE3 [HugePedia]
snp3D : Map Gene to Disease441272
BioCentury BCIQSPDYE3
ClinGenSPDYE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441272
Chemical/Pharm GKB GenePA164726234
Clinical trialSPDYE3
Miscellaneous
canSAR (ICR)SPDYE3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPDYE3
EVEXSPDYE3
GoPubMedSPDYE3
iHOPSPDYE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:26 CET 2017

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